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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 15 ✖

bioproject 1

  • PRJNA909412 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
890624 890624 PRJNA909412_P_NODE_14601_length_157_cov_1.059322_g14460_i0 PRJNA909412 14601 157 1.059322 1.66313554 Coelastrum microporum 55409 Plants Plants 241 2.5800000000000007e-59   NTclustered gi|2386955046|ref|NC_068582.1| 55409 g14460 i0 94.268 76.9426751592357 157 9 100 0 1 157 47652 47496 Coelastrum microporum chloroplast, complete genome blastn 12080 241 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrum Coelastrum microporum
5993857 5993857 PRJNA909412_P_NODE_10465_length_172_cov_2.902256_g10324_i0 PRJNA909412 10465 172 2.902256 4.99188032 Pediastrum duplex 3105 Plants Plants 252 1.33e-62   NTclustered gi|21040380|gb|AF183479.2| 3105 g10324 i0 93.143 30.4418604651163 175 6 100 4 1 172 3071 3242 Pediastrum duplex strain UTEX LB 1364 28S ribosomal RNA gene, partial sequence blastn 5236 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
5993913 5993913 PRJNA909412_P_NODE_16765_length_151_cov_2.517857_g16624_i0 PRJNA909412 16765 151 2.517857 3.80196407 Halochlorococcum sp. NIES-1838 2249730 Plants Plants 268 1.12e-67   NTclustered gi|1409970159|gb|MG721781.1| 2249730 g16624 i0 98.675 115.867549668874 151 2 100 0 1 151 731 881 Halochlorococcum sp. NIES-1838 PsbA (psbA) gene, complete cds; chloroplast blastn 17496 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Halochlorococcum Halochlorococcum sp. NIES-1838
7268815 7268815 PRJNA909412_P_NODE_15666_length_153_cov_2.561404_g15525_i0 PRJNA909412 15666 153 2.561404 3.91894812 Coelastrum microporum 55409 Plants Plants 283 4.0799999999999995e-72   NTclustered gi|2386955046|ref|NC_068582.1| 55409 g15525 i0 100 37.9346405228758 153 0 100 0 1 153 92728 92880 Coelastrum microporum chloroplast, complete genome blastn 5804 283 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrum Coelastrum microporum
7268881 7268881 PRJNA909412_P_NODE_9206_length_177_cov_1.144928_g9065_i0 PRJNA909412 9206 177 1.144928 2.02652256 Tetraselmis cordiformis 426497 Plants Plants 261 2.28e-65   NTclustered gi|371782133|emb|HE610165.1| 426497 g9065 i0 93.22 158.271186440678 177 12 100 0 1 177 3726 3902 Tetraselmis cordiformis plastid 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ile gene, tRNA-Ala gene and ITS1, strain SAG 26.82 blastn 28014 261 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis cordiformis
11452943 11452943 PRJNA909412_P_NODE_5949_length_214_cov_4.462857_g5808_i0 PRJNA909412 5949 214 4.462857 9.55051398 Chlorellales 35460 Plants Plants 335 1.6699999999999995e-87   NTclustered gi|1134678412|gb|KU598841.1| 248742 g5808 i0 94.86 96.5654205607477 214 11 100 0 1 214 714 501 Coccomyxa subellipsoidea strain SAG 216-13 23S ribosomal RNA (rrl) gene, partial sequence; chloroplast blastn 20665 335 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
12369835 12369835 PRJNA909412_P_NODE_8290_length_185_cov_0.842466_g8149_i0 PRJNA909412 8290 185 0.842466 1.5585621 Oedogonium crispum 321588 Plants Plants 309 8.49e-80   NTclustered gi|2031444893|gb|MW250872.1| 321588 g8149 i0 97.765 100.551351351351 179 4 97 0 7 185 78036 77858 Oedogonium crispum isolate 33_chl plastid, complete genome blastn 18602 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Oedogoniales Oedogoniaceae Oedogonium Oedogonium crispum
14918596 14918596 PRJNA909412_P_NODE_10352_length_172_cov_2.977444_g10211_i0 PRJNA909412 10352 172 2.977444 5.12120368 Trebouxia sp. A1-2 2608996 Plants Plants 84.2 5.12e-12   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g10211 i0 90.625 5.01744186046512 64 4 36 1 93 154 86144 86207 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 863 84.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
19100696 19100696 PRJNA909412_P_NODE_16675_length_151_cov_3.017857_g16534_i0 PRJNA909412 16675 151 3.017857 4.55696407 Chlamydomonas 3052 Plants Plants 268 1.12e-67   NTclustered gi|397100|emb|X68910.1| 28460 g16534 i0 98.675 135.145695364238 151 2 100 0 1 151 929 779 Chloroplast Chlamydomonas mexicana rrnL gene, exon 1 blastn 20407 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas mexicana
20375503 20375503 PRJNA909412_P_NODE_12336_length_162_cov_1.845528_g12195_i0 PRJNA909412 12336 162 1.845528 2.98975536 Cladophora 34125 Plants Plants 300 4.36e-77   NTclustered gi|388883486|dbj|AB665583.1| 34126 g12195 i0 100 100 162 0 100 0 1 162 581 742 Cladophora albida gene for 18S rRNA, partial sequence, isolate: alb-6 blastn 16200 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Cladophoraceae Cladophora Cladophora albida
21651408 21651408 PRJNA909412_P_NODE_4037_length_262_cov_2.210762_g3896_i0 PRJNA909412 4037 262 2.210762 5.79219644 Hydrodictyaceae 3103 Plants Plants 342 1.2699999999999996e-89   NTclustered gi|21040380|gb|AF183479.2| 3105 g3896 i0 90.698 68.5801526717557 258 23 98 1 6 262 2999 3256 Pediastrum duplex strain UTEX LB 1364 28S ribosomal RNA gene, partial sequence blastn 17968 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
23842877 23842877 PRJNA909412_P_NODE_11079_length_172_cov_1.248120_g10938_i0 PRJNA909412 11079 172 1.24812 2.1467664 Chlamydomonas chlamydogama 225041 Plants Plants 163 6.390000000000001e-36   NTclustered gi|66864258|gb|DQ015713.1| 225041 g10938 i0 83.815 1.79651162790698 173 26 100 2 1 172 3207 3036 Chlamydomonas chlamydogama strain UTEX 102 26S ribosomal RNA gene, partial sequence blastn 309 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas chlamydogama
23842881 23842881 PRJNA909412_P_NODE_11779_length_166_cov_2.692913_g11638_i0 PRJNA909412 11779 166 2.692913 4.47023558 Paradoxia multiseta 249350 Plants Plants 222 1e-53   NTclustered gi|723457039|ref|NC_025540.1| 249350 g11638 i0 90.964 119.861445783133 166 13 99 2 1 165 2789 2625 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 19897 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
23842939 23842939 PRJNA909412_P_NODE_299_length_1005_cov_78.720497_g246_i0 PRJNA909412 299 1005 78.720497 791.14099485 Stigeoclonium helveticum 55999 Plants Plants 65.8 1.31e-5   NTclustered gi|162134275|gb|EU123958.1| 55999 g246 i0 97.368 0.223880597014925 38 1 4 0 918 955 1821 1858 Stigeoclonium helveticum strain UTEX 441 small-subunit ribosomal RNA (rns) gene, complete sequence; mitochondrial blastn 225 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Stigeoclonium Stigeoclonium helveticum
25116764 25116764 PRJNA909412_P_NODE_6580_length_205_cov_1.313253_g6439_i0 PRJNA909412 6580 205 1.313253 2.69216865 Flechtneria rotunda 269715 Plants Plants 363 7.279999999999998e-96   NTclustered gi|523583541|gb|KC145438.1| 269715 g6439 i0 98.537 99.6682926829268 205 3 100 0 1 205 356 560 Scenedesmus rotundus strain BCP-SEV2VF49 28S ribosomal RNA gene, partial sequence blastn 20432 363 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Flechtneria Flechtneria rotunda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;