RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA909412 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22567755 22567755 PRJNA909412_P_NODE_12498_length_161_cov_4.040984_g12357_i0 PRJNA909412 12498 161 4.040984 6.50598424 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 56.5 0.001   NTclustered gi|2806473369|ref|XM_068508924.1| 1144522 g12357 i0 97.059 0.211180124223602 34 0 21 1 28 61 5651 5683 Tritrichomonas foetus uncharacterized protein (TRFO_33166), partial mRNA blastn 34 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
24200745 24200745 PRJNA909412_P_NODE_10699_length_172_cov_2.736842_g10558_i0 PRJNA909412 10699 172 2.736842 4.70736824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 69.4 1.43e-7   NTclustered gi|2794879238|ref|XM_067906199.1| 348837 g10558 i0 87.097 2.78488372093023 62 6 35 2 103 163 5740 5800 Spironucleus salmonicida Outer-arm dynein gamma (SS50377_22309), partial mRNA blastn 479 69.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;