RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA909412 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12369819 12369819 PRJNA909412_P_NODE_4770_length_239_cov_1.970000_g4629_i0 PRJNA909412 4770 239 1.97 4.7083 Soliformovum irregulare 435424 Evosea other_Eukaryota 401 1.8499999999999992e-107   NTclustered gi|374255694|emb|HE614594.1| 435424 g4629 i0 97.071 101.012552301255 239 6 99 1 2 239 561 323 Soliformovum irregulare partial 18S rRNA gene, strain ATCC 26826 blastn 24142 401 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
12369836 12369836 PRJNA909412_P_NODE_8330_length_184_cov_2.675862_g8189_i0 PRJNA909412 8330 184 2.675862 4.92358608 Dictyostelium purpureum 5786 Evosea other_Eukaryota 124 3.28e-24   NTclustered gi|330805726|ref|XM_003290782.1| 5786 g8189 i0 79.33 4.54347826086957 179 35 97 2 1 178 1715 1892 Dictyostelium purpureum cell division cycle protein 48 (DICPUDRAFT_81538), partial mRNA blastn 836 124 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
20017298 20017298 PRJNA909412_P_NODE_9416_length_175_cov_1.213235_g9275_i0 PRJNA909412 9416 175 1.213235 2.12316125 Soliformovum irregulare 435424 Evosea other_Eukaryota 231 1.76e-56   NTclustered gi|374255694|emb|HE614594.1| 435424 g9275 i0 90.395 3.03428571428571 177 15 100 2 1 175 1263 1439 Soliformovum irregulare partial 18S rRNA gene, strain ATCC 26826 blastn 531 231 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;