RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA908278 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4718871 4718871 PRJNA908278_P_NODE_31164_length_246_cov_0.890173_g31061_i0 PRJNA908278 31164 246 0.890173 2.18982558 uncultured ammonia-oxidizing archaeon 418404 Archaea Archaea 54.7 0.006   NTclustered gi|1173014822|gb|KX667110.1| 418404 g31061 i0 100 0.117886178861789 29 0 12 0 150 178 548 520 Uncultured ammonia-oxidizing archaeon clone A_N+CaO-1_21 ammonia monooxygenase subunit A (amoA) gene, partial cds blastn 29 54.7 1 Archaea               uncultured ammonia-oxidizing archaeon
9818109 9818109 PRJNA908278_P_NODE_19388_length_291_cov_1.307339_g19285_i0 PRJNA908278 19388 291 1.307339 3.80435649 uncultured marine thaumarchaeote AD1000_40_H03 1455914 Archaea Archaea 54.7 0.007   NTclustered gi|663502960|gb|KF900405.1| 1455914 g19285 i0 96.875 0.109965635738832 32 1 11 0 113 144 2083 2114 Uncultured marine thaumarchaeote AD1000_40_H03 genomic sequence blastn 32 54.7 1 Archaea   Thermoproteati Nitrososphaerota         uncultured marine thaumarchaeote AD1000_40_H03

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;