RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA908278 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
890191 890191 PRJNA908278_P_NODE_1541_length_877_cov_11.643035_g1459_i0 PRJNA908278 1541 877 11.643035 102.10941695 uncultured Desulfobacter sp. 240139 Bacteria Bacteria 60.2 5.28e-4   NTclustered gi|2814788332|emb|OY762228.2| 240139 g1459 i0 97.143 0.0399087799315849 35 1 4 0 538 572 3980971 3980937 MAG: uncultured Desulfobacter sp. isolate cd87f30c-30a5-471b-81aa-180dc00a34f5 genome assembly, chromosome: 1 blastn 35 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter uncultured Desulfobacter sp.
4718971 4718971 PRJNA908278_P_NODE_6184_length_471_cov_4.412060_g6081_i0 PRJNA908278 6184 471 4.41206 20.7808026 Pseudodesulfovibrio sp. zrk46 2725288 Bacteria Bacteria 60.2 2.74e-4   NTclustered gi|1832582227|gb|CP051216.1| 2725288 g6081 i0 94.872 0.719745222929936 39 1 8 1 250 288 470351 470388 Pseudodesulfovibrio sp. zrk46 chromosome, complete genome blastn 339 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio sp. zrk46

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;