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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA908278 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3441179 3441179 PRJNA908278_P_NODE_34963_length_241_cov_1.434524_g34860_i0 PRJNA908278 34963 241 1.434524 3.45720284 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.022   NTclustered gi|687022702|emb|LM525616.1| 174720 g34860 i0 100 0.116182572614108 28 0 12 0 78 105 91232 91259 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000026 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
5993670 5993670 PRJNA908278_P_NODE_6045_length_477_cov_1.900990_g5942_i0 PRJNA908278 6045 477 1.90099 9.0677223 Strongyloides ratti 34506 Nematoda Nematoda 183 1.58e-41   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g5942 i0 91.241 46.5408805031447 137 9 30 3 330 464 662 527 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 22200 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
9818019 9818019 PRJNA908278_P_NODE_11908_length_357_cov_1.084507_g11805_i0 PRJNA908278 11908 357 1.084507 3.87168999 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.034   NTclustered gi|687865724|emb|LK927720.1| 6239 g11805 i0 100 0.156862745098039 28 0 8 0 82 109 120882 120855 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000166 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13644010 13644010 PRJNA908278_P_NODE_33891_length_243_cov_0.905882_g33788_i0 PRJNA908278 33891 243 0.905882 2.20129326 Pristionchus maxplancki 1317128 Nematoda Nematoda 135 2.11e-27   NTclustered gi|478487033|gb|KC491696.1| 1317128 g33788 i0 81.065 1.33744855967078 169 32 70 0 63 231 177 9 Pristionchus maxplancki strain RS5594 small subunit ribosomal protein 1 (rps1) gene, partial cds blastn 325 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maxplancki
18741839 18741839 PRJNA908278_P_NODE_25875_length_253_cov_3.850000_g25772_i0 PRJNA908278 25875 253 3.85 9.7405 Strongyloides ratti 34506 Nematoda Nematoda 161 3.6599999999999995e-35   NTclustered gi|1376149827|ref|XM_024643266.1| 34506 g25772 i0 79.399 12.2332015810277 233 45 92 3 8 239 242 12 Strongyloides ratti Calmodulin (SRAE_2000439900), partial mRNA blastn 3095 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
20016695 20016695 PRJNA908278_P_NODE_10636_length_373_cov_1.486667_g10533_i0 PRJNA908278 10636 373 1.486667 5.54526791 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.035   NTclustered gi|687865695|emb|LK927564.1| 6239 g10533 i0 100 0.225201072386059 28 0 8 0 54 81 143223 143250 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000032 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20375310 20375310 PRJNA908278_P_NODE_10836_length_370_cov_2.074074_g10733_i0 PRJNA908278 10836 370 2.074074 7.6740738 Opisthokonta 33154 Nematoda Nematoda 54.7 0.01   NTclustered gi|1831517864|ref|NM_001136422.4| 6239 g10733 i0 100 0.559459459459459 29 0 8 0 71 99 8 36 Caenorhabditis elegans FIP (Fungus-Induced Protein) Related (fipr-2), partial mRNA blastn 207 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25116292 25116292 PRJNA908278_P_NODE_22000_length_276_cov_3.911330_g21897_i0 PRJNA908278 22000 276 3.91133 10.7952708 Pristionchus boliviae 1317127 Nematoda Nematoda 178 4.01e-40   NTclustered gi|478486926|gb|KC491642.1| 1317127 g21897 i0 88.889 31.4528985507246 144 16 52 0 5 148 160 303 Pristionchus boliviae strain RS5262 large subunit ribosomal protein 30 (rpl30) gene, partial cds blastn 8681 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus boliviae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;