RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA908278 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14918426 14918426 PRJNA908278_P_NODE_5652_length_492_cov_1.224344_g5549_i0 PRJNA908278 5652 492 1.224344 6.02377248 Metamycoplasma hominis 2098 Bacteria Bacteria 52.8 0.048   NTclustered gi|1495885541|gb|CP033021.1| 2098 g5549 i0 100 0.0569105691056911 28 0 6 0 109 136 744265 744238 Metamycoplasma hominis strain TO0613 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hominis
20016703 20016703 PRJNA908278_P_NODE_11156_length_366_cov_2.180887_g11053_i0 PRJNA908278 11156 366 2.180887 7.98204642 Mycoplasma nasistruthionis 353852 Bacteria Bacteria 54.7 0.01   NTclustered gi|1694400991|gb|CP041147.1| 353852 g11053 i0 100 0.0792349726775956 29 0 8 0 165 193 437666 437694 Mycoplasma nasistruthionis strain Ms03 chromosome blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma nasistruthionis
24200604 24200604 PRJNA908278_P_NODE_22099_length_276_cov_1.369458_g21996_i0 PRJNA908278 22099 276 1.369458 3.77970408 Bacillati 1783272 Bacteria Bacteria 52.8 0.025   NTclustered gi|2717001287|gb|CP146011.1| 29562 g21996 i0 100 0.507246376811594 28 0 10 0 131 158 115384 115411 Mesomycoplasma ovipneumoniae strain OCAWY_21255 chromosome, complete genome blastn 140 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;