RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA908278 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1249133 1249133 PRJNA908278_P_NODE_7401_length_434_cov_3.822715_g7298_i0 PRJNA908278 7401 434 3.822715 16.5905831 Ripella 1217112 Discosea other_Eukaryota 682 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g7298 i0 95.392 100.709677419355 434 10 100 4 1 434 617 1040 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 43708 688 0.991279069767442 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
4718638 4718638 PRJNA908278_P_NODE_10864_length_370_cov_1.296296_g10761_i0 PRJNA908278 10864 370 1.296296 4.7962952 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 60.2 2.1e-4   NTclustered gi|470421359|ref|XM_004337333.1| 1257118 g10761 i0 100 0.856756756756757 32 0 9 0 251 282 98 67 Acanthamoeba castellanii str. Neff ENTH domain containing protein (ACA1_275420), partial mRNA blastn 317 60.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11094080 11094080 PRJNA908278_P_NODE_8769_length_404_cov_1.474320_g8666_i0 PRJNA908278 8769 404 1.47432 5.9562528 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 309 2.08e-79   NTclustered gi|470504494|ref|XM_004348424.1| 1257118 g8666 i0 82.402 44.4158415841584 358 59 88 3 48 403 1 356 Acanthamoeba castellanii str. Neff Ras family protein (ACA1_157480), partial mRNA blastn 17944 309 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14918264 14918264 PRJNA908278_P_NODE_23052_length_270_cov_1.563452_g22949_i0 PRJNA908278 23052 270 1.563452 4.2213204 Vannella sp. GERL14 1002217 Discosea other_Eukaryota 392 1.28e-104   NTclustered gi|327391632|gb|HM363630.1| 1002217 g22949 i0 92.754 98.9592592592593 276 12 100 3 1 270 285 12 Vannella sp. GERL14 small subunit ribosomal RNA gene, partial sequence blastn 26719 392 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERL14
15277032 15277032 PRJNA908278_P_NODE_4352_length_552_cov_2.774530_g4249_i0 PRJNA908278 4352 552 2.77453 15.3154056 Ripella 1217112 Discosea other_Eukaryota 815 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g4249 i0 93.784 99.1938405797101 547 26 99 8 8 552 1 541 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 54755 815 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
19100532 19100532 PRJNA908278_P_NODE_2255_length_743_cov_4.526866_g2157_i0 PRJNA908278 2255 743 4.526866 33.63461438 Vannella 95228 Discosea other_Eukaryota 1186 0   NTclustered gi|861554667|gb|KP719197.1| 197532 g2157 i0 95.296 74.9892328398385 744 34 100 1 1 743 1303 560 Vannella simplex strain A17WVB small subunit ribosomal RNA gene, partial sequence blastn 55717 1186 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
22567525 22567525 PRJNA908278_P_NODE_5298_length_505_cov_3.831019_g5195_i0 PRJNA908278 5298 505 3.831019 19.34664595 Vannella simplex 197532 Discosea other_Eukaryota 852 0   NTclustered gi|284192604|gb|GQ265402.1| 197532 g5195 i0 97.228 97.3128712871287 505 10 100 2 1 505 799 299 Vannella simplex strain Ladoga Cl 12/2 clone A144.5 18S ribosomal RNA gene, partial sequence blastn 49143 852 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
25475708 25475708 PRJNA908278_P_NODE_5500_length_498_cov_1.065882_g5397_i0 PRJNA908278 5500 498 1.065882 5.30809236 Vannellidae 95227 Discosea other_Eukaryota 750 0   NTclustered gi|62865946|gb|AY929921.1| 325071 g5397 i0 93.849 100.253012048193 504 21 100 9 1 498 1175 1674 Platyamoeba sp. strain SUM1S/I 18S small subunit ribosomal RNA gene, partial sequence blastn 49926 750 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain SUM1S/I

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;