RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA908278 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
890234 890234 PRJNA908278_P_NODE_1_length_8217_cov_9.987598_g0_i0 PRJNA908278 1 8217 9.987598 820.68092766 Potyvirus nicotianavenaobscurum 3240570 Viruses Viruses 14183 0   NTclustered gi|557368216|gb|KF444434.1| 33765 g0 i0 97.822 39.074844833881 8217 179 100 0 1 8217 1306 9522 Tobacco vein banding mosaic virus isolate YN9.1, complete genome blastn 321078 14183 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus nicotianavenaobscurum
12369541 12369541 PRJNA908278_P_NODE_550_length_1285_cov_5.004125_g507_i0 PRJNA908278 550 1285 5.004125 64.30300625 Potyvirus nicotianavenaobscurum 3240570 Viruses Viruses 2170 0   NTclustered gi|557368216|gb|KF444434.1| 33765 g507 i0 97.338 29.7750972762646 1277 34 99 0 9 1285 1 1277 Tobacco vein banding mosaic virus isolate YN9.1, complete genome blastn 38261 2170 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus nicotianavenaobscurum
14918242 14918242 PRJNA908278_P_NODE_21252_length_281_cov_1.110577_g21149_i0 PRJNA908278 21252 281 1.110577 3.12072137 Passerivirus ahokothi 3431404 Viruses Viruses 54.7 0.007   NTclustered gi|304282485|ref|NC_014411.1| 871699 g21149 i0 96.875 0.113879003558719 32 1 11 0 134 165 4184 4153 Turdivirus 1, complete genome blastn 32 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Passerivirus Passerivirus ahokothi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;