RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA908278 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2524708 2524708 PRJNA908278_P_NODE_27742_length_250_cov_0.870056_g27639_i0 PRJNA908278 27742 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|2082264889|ref|XM_043070076.1| 3055 g27639 i0 100 0.232 29 0 12 0 112 140 2318 2290 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_14g615450v5), mRNA blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
3441109 3441109 PRJNA908278_P_NODE_28823_length_249_cov_0.801136_g28720_i0 PRJNA908278 28823 249 0.801136 1.99482864 Chlamydomonas reinhardtii 3055 Plants Plants 104 6.13e-18   NTclustered gi|2082244743|ref|XM_001698671.2| 3055 g28720 i0 85.149 2.04016064257028 101 15 41 0 149 249 754 654 Chlamydomonas reinhardtii ribosomal protein L23 (CHLRE_04g211800v5), mRNA blastn 508 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4718745 4718745 PRJNA908278_P_NODE_19264_length_292_cov_1.054795_g19161_i0 PRJNA908278 19264 292 1.054795 3.0800014 Chlamydomonas reinhardtii 3055 Plants Plants 193 1.53e-44   NTclustered gi|2082265902|ref|XM_043070515.1| 3055 g19161 i0 85.638 7.31849315068493 188 21 63 5 10 194 373 189 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_15g635600v5), mRNA blastn 2137 193 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5993538 5993538 PRJNA908278_P_NODE_27625_length_250_cov_0.870056_g27522_i0 PRJNA908278 27625 250 0.870056 2.17514 Auxenochlorella protothecoides 3075 Plants Plants 446 8.89e-121   NTclustered gi|760437442|ref|XM_011397488.1| 3075 g27522 i0 98.8 1 250 3 100 0 1 250 1176 927 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 250 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
8543047 8543047 PRJNA908278_P_NODE_10467_length_375_cov_2.801325_g10364_i0 PRJNA908278 10467 375 2.801325 10.50496875 Volvox carteri 3067 Plants Plants 54.7 0.01   NTclustered gi|349584|gb|L07946.1|VVCH1IA 3068 g10364 i0 100 0.154666666666667 29 0 8 0 258 286 1537 1509 Volvox carteri nagariensis histone (H1-I) gene, complete cds blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
11093827 11093827 PRJNA908278_P_NODE_20709_length_284_cov_1.094787_g20606_i0 PRJNA908278 20709 284 1.094787 3.10919508 Monoraphidium neglectum 145388 Plants Plants 200 8.85e-47   NTclustered gi|926781757|ref|XM_014043899.1| 145388 g20606 i0 82.883 11.9894366197183 222 38 78 0 63 284 399 178 Monoraphidium neglectum 60S ribosomal protein mRNA blastn 3405 200 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
16192997 16192997 PRJNA908278_P_NODE_15653_length_319_cov_2.304878_g15550_i0 PRJNA908278 15653 319 2.304878 7.35256082 Chlorella variabilis 554065 Plants Plants 156 2.22e-33   NTclustered gi|552847345|ref|XM_005851779.1| 554065 g15550 i0 80 0.836990595611285 215 39 67 4 65 277 509 297 Chlorella variabilis hypothetical protein (CHLNCDRAFT_133342) mRNA, complete cds blastn 267 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
18741734 18741734 PRJNA908278_P_NODE_15875_length_318_cov_0.804082_g15772_i0 PRJNA908278 15875 318 0.804082 2.55698076 Chlamydomonas reinhardtii 3055 Plants Plants 102 2.92e-17   NTclustered gi|2082263148|ref|XM_001693658.2| 3055 g15772 i0 83.486 25.877358490566 109 18 34 0 16 124 610 718 Chlamydomonas reinhardtii ribosomal protein S3a (CHLRE_13g568650v5), mRNA blastn 8229 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18741846 18741846 PRJNA908278_P_NODE_26855_length_251_cov_0.865169_g26752_i0 PRJNA908278 26855 251 0.865169 2.17157419 Chlamydomonas schloesseri 2026947 Plants Plants 95.3 3.73e-15   NTclustered gi|2089721549|gb|MZ445444.1| 2026947 g26752 i0 85.556 7.72509960159363 90 13 36 0 142 231 540 451 Chlamydomonas schloesseri strain SAG 2486 small nucleolar ribonucleoprotein U3 component mRNA, partial cds blastn 1939 95.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas schloesseri
21292284 21292284 PRJNA908278_P_NODE_32237_length_245_cov_0.895349_g32134_i0 PRJNA908278 32237 245 0.895349 2.19360505 Auxenochlorella protothecoides 3075 Plants Plants 172 1.63e-38   NTclustered gi|760441254|ref|XM_011399394.1| 3075 g32134 i0 92.5 0.489795918367347 120 9 49 0 1 120 445 564 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 120 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
23842445 23842445 PRJNA908278_P_NODE_20259_length_286_cov_1.446009_g20156_i0 PRJNA908278 20259 286 1.446009 4.13558574 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082250453|ref|XM_001690409.2| 3055 g20156 i0 100 0.104895104895105 30 0 10 0 61 90 177 206 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g328350v5), mRNA blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;