RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA908278 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7268382 7268382 PRJNA908278_P_NODE_22786_length_272_cov_1.160804_g22683_i0 PRJNA908278 22786 272 1.160804 3.15738688 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 497 2.67e-136   NTclustered gi|971146634|emb|LN879502.1| 389348 g22683 i0 99.632 75.7279411764706 272 1 100 0 1 272 1249920 1250191 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 20598 497 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
17468449 17468449 PRJNA908278_P_NODE_17034_length_308_cov_1.612766_g16931_i0 PRJNA908278 17034 308 1.612766 4.96731928 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 52.8 0.029   NTclustered gi|971146634|emb|LN879502.1| 389348 g16931 i0 100 0.0909090909090909 28 0 9 0 72 99 373616 373589 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
22567237 22567237 PRJNA908278_P_NODE_10398_length_376_cov_1.904290_g10295_i0 PRJNA908278 10398 376 1.90429 7.1601304 Calycomorphotria hydatis 2528027 Bacteria Bacteria 52.8 0.036   NTclustered gi|1712520392|gb|CP036316.1| 2528027 g10295 i0 96.875 0.0851063829787234 32 0 8 1 146 176 990346 990377 Calycomorphotria hydatis strain V22 chromosome blastn 32 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Calycomorphotria Calycomorphotria hydatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;