RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA908278" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA908278 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22567235 22567235 PRJNA908278_P_NODE_10078_length_381_cov_1.750000_g9975_i0 PRJNA908278 10078 381 1.75 6.6675 Thecamonas trahens 529818 Root_unresolved Root_unresolved 82.4 4.63e-11   NTclustered gi|923123300|ref|XM_013899665.1| 461836 g9975 i0 94.34 0.325459317585302 53 3 14 0 187 239 1394 1342 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_08704), mRNA blastn 124 82.4 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22567483 22567483 PRJNA908278_P_NODE_34018_length_243_cov_0.858824_g33915_i0 PRJNA908278 34018 243 0.858824 2.08694232 Thecamonas trahens 529818 Root_unresolved Root_unresolved 95.3 3.59e-15   NTclustered gi|923132072|ref|XM_013904048.1| 461836 g33915 i0 93.75 0.378600823045267 64 3 26 1 1 63 271 334 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_02595), partial mRNA blastn 92 95.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;