RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA906294 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2163462 2163462 PRJNA906294_P_NODE_221502_length_244_cov_1.029240_g217386_i0 PRJNA906294 221502 244 1.02924 2.5113456 Nibricoccus aquaticus 2576891 Bacteria Bacteria 346 9.019999999999999e-91   NTclustered gi|1243404978|gb|CP023344.1| 2576891 g217386 i0 95.392 189.049180327869 217 10 89 0 1 217 2498040 2497824 Nibricoccus aquaticus strain HZ-65 chromosome, complete genome blastn 46128 346 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus aquaticus
13640810 13640810 PRJNA906294_P_NODE_179351_length_276_cov_1.339901_g175235_i0 PRJNA906294 179351 276 1.339901 3.69812676 Fontisphaera persica 2974023 Bacteria Bacteria 324 4.87e-84   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g175235 i0 87.9 41.2898550724638 281 27 99 5 3 276 3861594 3861874 Fontisphaera persica strain B-154 chromosome, complete genome blastn 11396 324 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
14915720 14915720 PRJNA906294_P_NODE_205112_length_250_cov_4.124294_g200996_i0 PRJNA906294 205112 250 4.124294 10.310735 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 Bacteria Bacteria 329 9.34e-86   NTclustered gi|939198278|gb|CP012665.1| 1704307 g200996 i0 90.476 163.316 252 20 99 3 1 249 15769 15519 Candidatus Xiphinematobacter sp. Idaho Grape, complete genome blastn 40829 329 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria     Candidatus Xiphinematobacter Candidatus Xiphinematobacter sp. Idaho Grape
23838766 23838766 PRJNA906294_P_NODE_157359_length_301_cov_4.859649_g153243_i0 PRJNA906294 157359 301 4.859649 14.62754349 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 372 1.89e-98   NTclustered gi|2874254020|emb|OY970345.1| 412056 g153243 i0 89.037 222.129568106312 301 31 100 2 1 301 3894530 3894828 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 66861 372 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;