RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA906294 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
888143 888143 PRJNA906294_P_NODE_223741_length_243_cov_1.600000_g219625_i0 PRJNA906294 223741 243 1.6 3.888 Thermosulfurimonas marina 2047767 Bacteria Bacteria 183 7.44e-42   NTclustered gi|1831559056|gb|CP042909.1| 2047767 g219625 i0 80.591 15.0946502057613 237 46 98 0 3 239 484038 483802 Thermosulfurimonas marina strain SU872 chromosome, complete genome blastn 3668 183 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermosulfurimonas Thermosulfurimonas marina
3438870 3438870 PRJNA906294_P_NODE_22283_length_1227_cov_7.052860_g19515_i0 PRJNA906294 22283 1227 7.05286 86.5385922 Geoalkalibacter subterraneus 483547 Bacteria Bacteria 215 1.51e-50   NTclustered gi|749207097|gb|CP010311.1| 483547 g19515 i0 85.167 5.08068459657702 209 31 17 0 219 427 22924 23132 Geoalkalibacter subterraneus strain Red1, complete genome blastn 6234 215 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter subterraneus
22566579 22566579 PRJNA906294_P_NODE_73638_length_525_cov_2.287611_g69533_i0 PRJNA906294 73638 525 2.287611 12.00995775 uncultured Desulfobacter sp. 240139 Bacteria Bacteria 54.7 0.014   NTclustered gi|2814788332|emb|OY762228.2| 240139 g69533 i0 100 0.0552380952380952 29 0 6 0 280 308 604126 604154 MAG: uncultured Desulfobacter sp. isolate cd87f30c-30a5-471b-81aa-180dc00a34f5 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter uncultured Desulfobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;