RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA906294 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2163567 2163567 PRJNA906294_P_NODE_226322_length_242_cov_2.366864_g222206_i0 PRJNA906294 226322 242 2.366864 5.72781088 Urbifossiella limnaea 2528023 Bacteria Bacteria 215 2.63e-51   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g222206 i0 82.988 1.66942148760331 241 38 99 3 3 242 3846345 3846583 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 404 215 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
3437520 3437520 PRJNA906294_P_NODE_166523_length_290_cov_1.649770_g162407_i0 PRJNA906294 166523 290 1.64977 4.784333 uncultured Planctomycetota bacterium 120965 Bacteria Bacteria 239 1.92e-58   NTclustered gi|2874254043|emb|OY970367.1| 120965 g162407 i0 81.973 100.558620689655 294 42 99 10 4 290 3453834 3454123 MAG: uncultured Planctomycetota bacterium isolate MFD04580.bin.c.2 genome assembly, chromosome: 1 blastn 29162 239 1 Bacteria PVC group Pseudomonadati Planctomycetota         uncultured Planctomycetota bacterium
5990260 5990260 PRJNA906294_P_NODE_170185_length_286_cov_1.399061_g166069_i0 PRJNA906294 170185 286 1.399061 4.00131446 Adhaeretor mobilis 1930276 Bacteria Bacteria 52.8 0.026   NTclustered gi|1712449852|gb|CP036263.1| 1930276 g166069 i0 100 0.0979020979020979 28 0 10 0 121 148 1256132 1256159 Adhaeretor mobilis strain HG15A2 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae Adhaeretor Adhaeretor mobilis
9814743 9814743 PRJNA906294_P_NODE_164608_length_292_cov_3.584475_g160492_i0 PRJNA906294 164608 292 3.584475 10.466667 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 213 1.17e-50   NTclustered gi|2874254106|emb|OY970189.1| 100233 g160492 i0 85.784 135.753424657534 204 25 69 4 27 228 4317090 4317291 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 39640 213 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
17826396 17826396 PRJNA906294_P_NODE_77354_length_506_cov_1.302540_g73245_i0 PRJNA906294 77354 506 1.30254 6.5908524 Schlesneria 656899 Bacteria Bacteria 462 1.93e-125   NTclustered gi|12583970|gb|AF245374.1|AF245374 149589 g73245 i0 83.562 372.509881422925 511 66 100 12 1 506 586 89 Planctomycete str. 639 23S ribosomal RNA gene, partial sequence blastn 188490 462 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 639
18739463 18739463 PRJNA906294_P_NODE_211755_length_248_cov_0.868571_g207639_i0 PRJNA906294 211755 248 0.868571 2.15405608 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 300 7.26e-77   NTclustered gi|2874253948|emb|OY970273.1| 100233 g207639 i0 88.71 85.875 248 25 99 3 1 246 2621794 2622040 MAG: uncultured Planctomycetaceae bacterium isolate MFD09495.bin.c.1 genome assembly, chromosome: 1 blastn 21297 300 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;