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contig_metadata

28 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 28 ✖

tax_clade 1

bioproject 1

  • PRJNA906294 · 28 ✖

analysis 1

  • blastn · 28 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
889875 889875 PRJNA906294_P_NODE_90381_length_448_cov_71.949333_g86267_i0 PRJNA906294 90381 448 71.949333 322.33301184 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 78.7 7.16e-10   NTclustered gi|695382888|ref|XM_009519246.1| 67593 g86267 i0 100 0.537946428571429 42 0 9 0 195 236 357 398 Phytophthora sojae hypothetical protein mRNA blastn 241 78.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
4714480 4714480 PRJNA906294_P_NODE_130044_length_343_cov_3.033333_g125928_i0 PRJNA906294 130044 343 3.033333 10.40433219 Lagena radicicola 1489789 SAR_Eukaryotes SAR_Eukaryotes 623 5.479999999999999e-174   NTclustered gi|745285318|gb|KJ716869.1| 1489789 g125928 i0 99.417 100.314868804665 343 2 100 0 1 343 925 583 Lagena radicicola culture-collection DAOM:BR89-12 18S ribosomal RNA gene, partial sequence; and 5.8S ribosomal RNA genes and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 34408 623 1 Eukaryota Sar   Oomycota     Lagenaceae Lagena Lagena radicicola
5989558 5989558 PRJNA906294_P_NODE_139785_length_327_cov_1.196850_g135669_i0 PRJNA906294 139785 327 1.19685 3.9136995 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 220 7.97e-53   NTclustered gi|695403836|ref|XM_009525087.1| 67593 g135669 i0 83.913 37.3730886850153 230 37 70 0 98 327 88 317 Phytophthora sojae hypothetical protein mRNA blastn 12221 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
7265393 7265393 PRJNA906294_P_NODE_185766_length_269_cov_2.173469_g181650_i0 PRJNA906294 185766 269 2.173469 5.84663161 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 475 1.2299999999999999e-129   NTclustered gi|33520250|gb|AY273995.1| 92964 g181650 i0 98.513 99.9814126394052 269 4 100 0 1 269 463 195 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 26895 475 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
8540043 8540043 PRJNA906294_P_NODE_179787_length_275_cov_4.267327_g175671_i0 PRJNA906294 179787 275 4.267327 11.73514925 Lagena radicicola 1489789 SAR_Eukaryotes SAR_Eukaryotes 486 5.8499999999999985e-133   NTclustered gi|745285318|gb|KJ716869.1| 1489789 g175671 i0 98.545 99.8872727272727 275 4 100 0 1 275 2617 2891 Lagena radicicola culture-collection DAOM:BR89-12 18S ribosomal RNA gene, partial sequence; and 5.8S ribosomal RNA genes and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27469 486 1 Eukaryota Sar   Oomycota     Lagenaceae Lagena Lagena radicicola
8540439 8540439 PRJNA906294_P_NODE_196827_length_258_cov_1.864865_g192711_i0 PRJNA906294 196827 258 1.864865 4.8113517 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 425 1.2e-114   NTclustered gi|325194231|emb|FR825088.1| 890382 g192711 i0 96.498 1.39147286821705 257 9 99 0 2 258 972 716 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 359 425 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
8542594 8542594 PRJNA906294_P_NODE_80507_length_490_cov_2.621103_g76395_i0 PRJNA906294 80507 490 2.621103 12.8434047 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.6e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g76395 i0 80.533 69.0367346938775 375 65 75 4 114 481 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
9814562 9814562 PRJNA906294_P_NODE_156828_length_302_cov_1.668122_g152712_i0 PRJNA906294 156828 302 1.668122 5.03772844 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 298 3.27e-76   NTclustered gi|675199806|ref|XM_008910540.1| 761204 g152712 i0 84.488 99.476821192053 303 45 100 2 1 302 218 519 Phytophthora parasitica INRA-310 calmodulin mRNA blastn 30042 298 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
9815027 9815027 PRJNA906294_P_NODE_176408_length_279_cov_1.475728_g172292_i0 PRJNA906294 176408 279 1.475728 4.11728112 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 189 1.88e-43   NTclustered gi|813177592|ref|XM_012349876.1| 695850 g172292 i0 79.121 20.831541218638 273 57 98 0 7 279 593 321 Saprolegnia parasitica CBS 223.65 guanine nucleotide-binding protein subunit beta-2-like 1 partial mRNA blastn 5812 189 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
9815464 9815464 PRJNA906294_P_NODE_195048_length_260_cov_1.518717_g190932_i0 PRJNA906294 195048 260 1.518717 3.9486642 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 309 1.2700000000000002e-79   NTclustered gi|325194614|emb|FR825428.1| 890382 g190932 i0 88.346 86.4884615384615 266 19 100 8 1 260 567 308 Albugo laibachii Nc14, genomic contig CONTIG_2255_NC14_v4_940_13474 blastn 22487 309 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11093602 11093602 PRJNA906294_P_NODE_95269_length_431_cov_1.513966_g91155_i0 PRJNA906294 95269 431 1.513966 6.52519346 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 220 1.08e-52   NTclustered gi|813198778|ref|XM_012353582.1| 695850 g91155 i0 78.761 16.0812064965197 339 65 78 7 65 399 456 121 Saprolegnia parasitica CBS 223.65 autophagy-like protein 8 mRNA blastn 6931 220 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
12366619 12366619 PRJNA906294_P_NODE_194510_length_261_cov_1.085106_g190394_i0 PRJNA906294 194510 261 1.085106 2.83212666 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 219 2.22e-52   NTclustered gi|2794923052|ref|XM_067881813.1| 164328 g190394 i0 84.375 61.9463601532567 224 33 85 2 35 257 69 291 Phytophthora ramorum Caltractin (KRP23_11280), partial mRNA blastn 16168 219 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
12367334 12367334 PRJNA906294_P_NODE_226430_length_242_cov_1.822485_g222314_i0 PRJNA906294 226430 242 1.822485 4.4104137 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 137 5.85e-28   NTclustered gi|189084924|gb|BT032455.1| 4784 g222314 i0 81.548 39.1239669421488 168 29 69 2 75 241 119 285 Phytophthora capsici clone CBOU133-E02 mRNA sequence blastn 9468 137 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
14916338 14916338 PRJNA906294_P_NODE_232892_length_236_cov_2.110429_g228776_i0 PRJNA906294 232892 236 2.110429 4.98061244 uncultured Oomycota 179533 SAR_Eukaryotes SAR_Eukaryotes 414 2.34e-111   NTclustered gi|573864535|gb|KF745973.1| 179533 g228776 i0 98.712 100.266949152542 233 3 99 0 4 236 335 103 Uncultured oomycete clone OTU-22 28S ribosomal RNA gene, partial sequence blastn 23663 414 1 Eukaryota Sar   Oomycota         uncultured Oomycota
14917124 14917124 PRJNA906294_P_NODE_58452_length_627_cov_1.770758_g54398_i0 PRJNA906294 58452 627 1.770758 11.10265266 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 569 1.3899999999999994e-157   NTclustered gi|325194423|emb|FR825253.1| 890382 g54398 i0 88.655 78.548644338118 476 43 75 8 1 468 475 947 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 49250 569 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14917747 14917747 PRJNA906294_P_NODE_83532_length_477_cov_1.009901_g79418_i0 PRJNA906294 83532 477 1.009901 4.81722777 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 435 3.95e-117   NTclustered gi|695427006|ref|XM_009531266.1| 67593 g79418 i0 84.035 82.1970649895178 451 72 95 0 1 451 175 625 Phytophthora sojae hypothetical protein mRNA blastn 39208 435 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
15276106 15276106 PRJNA906294_P_NODE_121872_length_359_cov_2.139860_g117756_i0 PRJNA906294 121872 359 2.13986 7.6820974 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 300 1.1e-76   NTclustered gi|813139567|ref|XM_012343453.1| 695850 g117756 i0 85.417 81.8022284122563 288 42 80 0 35 322 380 93 Saprolegnia parasitica CBS 223.65 hsp70-like protein mRNA blastn 29367 300 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
18739208 18739208 PRJNA906294_P_NODE_201735_length_253_cov_4.605556_g197619_i0 PRJNA906294 201735 253 4.605556 11.65205668 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 435 1.95e-117   NTclustered gi|33520250|gb|AY273995.1| 92964 g197619 i0 97.628 101.494071146245 253 6 100 0 1 253 464 716 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 25678 435 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
20012042 20012042 PRJNA906294_P_NODE_106096_length_397_cov_3.975309_g101981_i0 PRJNA906294 106096 397 3.975309 15.78197673 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 141 7.89e-29   NTclustered gi|669152735|ref|XM_008613708.1| 1156394 g101981 i0 79.07 1.37531486146096 215 37 53 8 16 226 115 325 Saprolegnia diclina VS20 S25 ribosomal protein mRNA blastn 546 141 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
20012789 20012789 PRJNA906294_P_NODE_139516_length_327_cov_1.720472_g135400_i0 PRJNA906294 139516 327 1.720472 5.62594344 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 292 1.66e-74   NTclustered gi|2289|emb|X59936.1| 4766 g135400 i0 87.903 73.6697247706422 248 30 76 0 1 248 248 1 A.bisexualis gene for actin blastn 24090 292 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
20374897 20374897 PRJNA906294_P_NODE_202856_length_252_cov_2.547486_g198740_i0 PRJNA906294 202856 252 2.547486 6.41966472 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 137 6.13e-28   NTclustered gi|695467845|ref|XM_009541429.1| 67593 g198740 i0 92.708 37.3174603174603 96 5 38 2 158 252 1265 1359 Phytophthora sojae hypothetical protein mRNA blastn 9404 137 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
20375035 20375035 PRJNA906294_P_NODE_234656_length_213_cov_4.821429_g230540_i0 PRJNA906294 234656 213 4.821429 10.26964377 Pythiales 121069 SAR_Eukaryotes SAR_Eukaryotes 381 2.1e-101   NTclustered gi|505574758|gb|AY598618.2| 41045 g230540 i0 99.057 99.5352112676056 212 2 99 0 1 212 1325 1536 Pythium oligandrum strain CBS 382.34 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 21201 381 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
22562894 22562894 PRJNA906294_P_NODE_126078_length_351_cov_1.223022_g121962_i0 PRJNA906294 126078 351 1.223022 4.29280722 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 89.8 2.53e-13   NTclustered gi|698782790|ref|XM_009826137.1| 112090 g121962 i0 92.063 0.45014245014245 63 5 18 0 289 351 13 75 Aphanomyces astaci CMGC/CDK protein kinase mRNA blastn 158 89.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
22563199 22563199 PRJNA906294_P_NODE_138758_length_328_cov_2.384314_g134642_i0 PRJNA906294 138758 328 2.384314 7.82054992 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 292 1.67e-74   NTclustered gi|2795052452|ref|XM_067926699.1| 4785 g134642 i0 91.509 61.9298780487805 212 18 65 0 1 212 308 519 Phytophthora cinnamomi caltractin (IUM83_02754), partial mRNA blastn 20313 292 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
22926680 22926680 PRJNA906294_P_NODE_94578_length_433_cov_2.266667_g90464_i0 PRJNA906294 94578 433 2.266667 9.81466811 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 289 2.93e-73   NTclustered gi|695468664|ref|XM_009541629.1| 67593 g90464 i0 87.903 51.0623556581986 248 26 57 4 1 246 313 558 Phytophthora sojae hypothetical protein mRNA blastn 22110 289 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23841988 23841988 PRJNA906294_P_NODE_86379_length_464_cov_4.035806_g82265_i0 PRJNA906294 86379 464 4.035806 18.72613984 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 246 1.93e-60   NTclustered gi|675212636|ref|XM_008916955.1| 761204 g82265 i0 81.433 11.2887931034483 307 52 66 5 148 452 287 590 Phytophthora parasitica INRA-310 40S ribosomal protein S23 mRNA blastn 5238 246 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
25111706 25111706 PRJNA906294_P_NODE_117520_length_369_cov_1.192568_g113405_i0 PRJNA906294 117520 369 1.192568 4.40057592 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 265 4.14e-66   NTclustered gi|2795056665|ref|XM_067942257.1| 4785 g113405 i0 80.342 8.30352303523035 351 67 95 2 12 361 656 307 Phytophthora cinnamomi 26s protease regulatory subunit 4 (IUM83_17314), partial mRNA blastn 3064 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
25113866 25113866 PRJNA906294_P_NODE_209740_length_248_cov_1.325714_g205624_i0 PRJNA906294 209740 248 1.325714 3.28777072 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 322 1.55e-83   NTclustered gi|325194423|emb|FR825253.1| 890382 g205624 i0 90 100.717741935484 250 23 100 2 1 248 223 472 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 24978 322 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;