RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA906294 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3800978 3800978 PRJNA906294_P_NODE_91263_length_445_cov_2.956989_g87149_i0 PRJNA906294 91263 445 2.956989 13.15860105 Pristionchus 54125 Nematoda Nematoda 73.1 3.31e-8   NTclustered gi|158821918|gb|EU195982.1| 54126 g87149 i0 86.765 5.0561797752809 68 5 15 4 1 66 1939 1874 Pristionchus pacificus strain 312 28S ribosomal RNA gene, partial sequence blastn 2250 73.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
12728204 12728204 PRJNA906294_P_NODE_35010_length_912_cov_3.926103_g31490_i0 PRJNA906294 35010 912 3.926103 35.80605936 Metazoa 33208 Nematoda Nematoda 174 1.8799999999999998e-38   NTclustered gi|158821894|gb|EU195958.1| 473172 g31490 i0 93.22 15.8629385964912 118 8 13 0 648 765 1892 2009 Protorhabditis sp. JB122 28S ribosomal RNA gene, partial sequence blastn 14467 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Protorhabditis Protorhabditis sp. JB122
16188552 16188552 PRJNA906294_P_NODE_118433_length_367_cov_1.122449_g114318_i0 PRJNA906294 118433 367 1.122449 4.11938783 Caenorhabditis briggsae 6238 Nematoda Nematoda 372 2.36e-98   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g114318 i0 86.337 92.4223433242507 344 43 93 4 1 342 966 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 33919 372 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
18738530 18738530 PRJNA906294_P_NODE_175195_length_280_cov_2.212560_g171079_i0 PRJNA906294 175195 280 2.21256 6.195168 Pristionchus marianneae 376546 Nematoda Nematoda 115 3.24e-21   NTclustered gi|150982207|gb|EF634692.1| 376546 g171079 i0 80.645 5.53214285714286 155 24 54 5 117 268 152 1 Pristionchus marianneae large subunit ribosomal protein 29 (rpl-29) mRNA, complete cds blastn 1549 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus marianneae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;