RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA906294 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3438849 3438849 PRJNA906294_P_NODE_221623_length_244_cov_0.900585_g217507_i0 PRJNA906294 221623 244 0.900585 2.1974274 Melittangium boletus 83453 Bacteria Bacteria 294 3.31e-75   NTclustered gi|1243026503|gb|CP022163.1| 1294270 g217507 i0 88.75 5.53688524590164 240 27 98 0 2 241 9185952 9186191 Melittangium boletus DSM 14713 chromosome, complete genome blastn 1351 294 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Melittangium Melittangium boletus
8538427 8538427 PRJNA906294_P_NODE_111307_length_384_cov_0.829582_g107192_i0 PRJNA906294 111307 384 0.829582 3.18559488 Archangium violaceum 83451 Bacteria Bacteria 276 2e-69   NTclustered gi|2619762464|gb|CP137851.1| 83451 g107192 i0 83.062 82.8645833333333 307 48 79 4 80 384 8716671 8716367 Archangium violaceum strain KYC5002 chromosome, complete genome blastn 31820 276 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
9815981 9815981 PRJNA906294_P_NODE_218568_length_245_cov_1.174419_g214452_i0 PRJNA906294 218568 245 1.174419 2.87732655 Pyxidicoccus parkwayensis 2813578 Bacteria Bacteria 364 2.5e-96   NTclustered gi|1998505907|gb|CP071090.1| 2813578 g214452 i0 93.469 257.473469387755 245 16 100 0 1 245 2161387 2161143 Pyxidicoccus parkwaysis strain SCPEA02 chromosome blastn 63081 364 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus parkwayensis
20374459 20374459 PRJNA906294_P_NODE_117996_length_368_cov_1.088136_g113881_i0 PRJNA906294 117996 368 1.088136 4.00434048 Archangiaceae 39 Bacteria Bacteria 636 7.589999999999999e-178   NTclustered gi|2579665545|gb|CP043492.1| 43 g113881 i0 97.826 272.005434782609 368 8 100 0 1 368 451937 452304 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 100098 636 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
21291945 21291945 PRJNA906294_P_NODE_95837_length_429_cov_1.556180_g91723_i0 PRJNA906294 95837 429 1.55618 6.6760122 Minicystis rosea 888845 Bacteria Bacteria 728 0   NTclustered gi|1127353251|gb|CP016211.1| 888845 g91723 i0 97.424 206.004662004662 427 11 99 0 1 427 771480 771054 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 88376 728 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
22925885 22925885 PRJNA906294_P_NODE_130038_length_343_cov_3.588889_g125922_i0 PRJNA906294 130038 343 3.588889 12.30988927 root 1 Root_unresolved Root_unresolved 52.8 0.032   NTclustered gi|2318731907|gb|CP104804.1| 34 g125922 i0 100 6.28571428571429 28 0 8 0 157 184 3878455 3878428 Myxococcus xanthus strain DK1050 chromosome blastn 2156 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;