RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA906294 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18741324 18741324 PRJNA906294_P_NODE_86795_length_463_cov_1.066667_g82681_i0 PRJNA906294 86795 463 1.066667 4.93866821 Patiria miniata 46514 Echinodermata other_Eukaryota 56.5 0.003   NTclustered gi|1944932961|ref|XM_038222080.1| 46514 g82681 i0 96.97 3.07775377969762 33 1 7 0 66 98 5120 5088 PREDICTED: Patiria miniata bromodomain and WD repeat-containing protein 3-like (LOC119745602), transcript variant X1, mRNA blastn 1425 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
21650887 21650887 PRJNA906294_P_NODE_231617_length_241_cov_0.904762_g227501_i0 PRJNA906294 231617 241 0.904762 2.18047642 Metazoa 33208 Echinodermata other_Eukaryota 159 1.24e-34   NTclustered gi|1944861957|ref|XM_038196751.1| 46514 g227501 i0 80.184 22.9211618257261 217 39 89 4 26 240 1236 1022 PREDICTED: Patiria miniata 26S proteasome regulatory subunit 6A-B (LOC119725354), mRNA blastn 5524 159 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;