RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA906294 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2163561 2163561 PRJNA906294_P_NODE_226042_length_243_cov_0.894118_g221926_i0 PRJNA906294 226042 243 0.894118 2.17270674 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 1.23e-49   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g221926 i0 82.231 63.9711934156379 242 43 99 0 1 242 238 479 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 15545 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12367547 12367547 PRJNA906294_P_NODE_24430_length_1158_cov_1.933641_g21496_i0 PRJNA906294 24430 1158 1.933641 22.39156278 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 466 3.559999999999999e-126   NTclustered gi|470416742|ref|XM_004336868.1| 1257118 g21496 i0 78.65 6.74784110535406 726 138 62 15 400 1115 1825 1107 Acanthamoeba castellanii str. Neff ribonuclease L inhibitor family protein (ACA1_325180), partial mRNA blastn 7814 466 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25114736 25114736 PRJNA906294_P_NODE_40640_length_821_cov_1.573529_g36930_i0 PRJNA906294 40640 821 1.573529 12.91867309 Vannella septentrionalis 197531 Discosea other_Eukaryota 250 2.73e-61   NTclustered gi|300078499|gb|GU001161.1| 197531 g36930 i0 76.164 36.3045066991474 537 92 64 25 143 669 1785 2295 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 29806 250 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;