RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA906294 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7626783 7626783 PRJNA906294_P_NODE_233646_length_231_cov_2.417722_g229530_i0 PRJNA906294 233646 231 2.417722 5.58493782 Aliarcobacter 2321111 Bacteria Bacteria 425 1.0599999999999999e-114   NTclustered gi|1817415496|gb|CP026656.1| 28198 g229530 i0 100 391.424242424242 230 0 99 0 2 231 57029 56800 Aliarcobacter cryaerophilus strain M830MA chromosome, complete genome blastn 90419 425 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
11090392 11090392 PRJNA906294_P_NODE_162329_length_295_cov_1.725225_g158213_i0 PRJNA906294 162329 295 1.725225 5.08941375 uncultured Arcobacter sp. 165434 Bacteria Bacteria 342 1.45e-89   NTclustered gi|682122801|gb|KJ739652.1| 165434 g158213 i0 89.888 135.416949152542 267 25 90 2 30 295 6 271 Uncultured Arcobacter sp. clone ONWR3-May-27-2012 23S ribosomal RNA gene, partial sequence blastn 39948 342 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter uncultured Arcobacter sp.
12728033 12728033 PRJNA906294_P_NODE_202290_length_253_cov_1.350000_g198174_i0 PRJNA906294 202290 253 1.35 3.4155 Bacteria 2 Bacteria Bacteria 446 9.01e-121   NTclustered gi|2290299522|gb|CP103055.1| 195 g198174 i0 98.419 102 253 4 100 0 1 253 741790 742042 Campylobacter coli strain YC3-24 chromosome, complete genome blastn 25806 446 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
13643266 13643266 PRJNA906294_P_NODE_79591_length_495_cov_0.900474_g75480_i0 PRJNA906294 79591 495 0.900474 4.4573463 Helicobacter pylori 210 Bacteria Bacteria 52.8 0.048   NTclustered gi|2641893407|gb|CP078355.1| 210 g75480 i0 100 0.0565656565656566 28 0 6 0 112 139 275436 275463 Helicobacter pylori strain HpGP-SPA-105 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;