RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA906294 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2524381 2524381 PRJNA906294_P_NODE_29902_length_1015_cov_3.138004_g26623_i0 PRJNA906294 29902 1015 3.138004 31.8507406 Cetobacterium 180162 Bacteria Bacteria 1814 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g26623 i0 98.916 528.376354679803 1015 11 100 0 1 1015 278752 279766 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 536302 1814 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
20374999 20374999 PRJNA906294_P_NODE_227396_length_242_cov_0.911243_g223280_i0 PRJNA906294 227396 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 448 2.3799999999999995e-121   NTclustered gi|285802353|gb|GU412335.1| 851 g223280 i0 100 112 242 0 100 0 1 242 29 270 Fusobacterium nucleatum clone BR092 16S ribosomal RNA gene, partial sequence blastn 27104 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
22564817 22564817 PRJNA906294_P_NODE_207538_length_249_cov_0.875000_g203422_i0 PRJNA906294 207538 249 0.875 2.17875 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 448 2.46e-121   NTclustered gi|1276716588|gb|CP024703.1| 2663009 g203422 i0 99.194 478.81124497992 248 2 99 0 2 249 1342193 1341946 Fusobacterium pseudoperiodonticum strain KCOM 2305 chromosome, complete genome blastn 119224 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;