contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA906294" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2163462 | 2163462 | PRJNA906294_P_NODE_221502_length_244_cov_1.029240_g217386_i0 | PRJNA906294 | 221502 | 244 | 1.02924 | 2.5113456 | Nibricoccus aquaticus | 2576891 | Bacteria | Bacteria | 346 | 9.019999999999999e-91 | NTclustered | gi|1243404978|gb|CP023344.1| | 2576891 | g217386 | i0 | 95.392 | 189.049180327869 | 217 | 10 | 89 | 0 | 1 | 217 | 2498040 | 2497824 | Nibricoccus aquaticus strain HZ-65 chromosome, complete genome | blastn | 46128 | 346 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Nibricoccus | Nibricoccus aquaticus | |
| 2163567 | 2163567 | PRJNA906294_P_NODE_226322_length_242_cov_2.366864_g222206_i0 | PRJNA906294 | 226322 | 242 | 2.366864 | 5.72781088 | Urbifossiella limnaea | 2528023 | Bacteria | Bacteria | 215 | 2.63e-51 | NTclustered | gi|1712585314|gb|CP036273.1| | 2528023 | g222206 | i0 | 82.988 | 1.66942148760331 | 241 | 38 | 99 | 3 | 3 | 242 | 3846345 | 3846583 | Urbifossiella limnaea strain ETA_A1 chromosome, complete genome | blastn | 404 | 215 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Urbifossiella | Urbifossiella limnaea | |
| 3437520 | 3437520 | PRJNA906294_P_NODE_166523_length_290_cov_1.649770_g162407_i0 | PRJNA906294 | 166523 | 290 | 1.64977 | 4.784333 | uncultured Planctomycetota bacterium | 120965 | Bacteria | Bacteria | 239 | 1.92e-58 | NTclustered | gi|2874254043|emb|OY970367.1| | 120965 | g162407 | i0 | 81.973 | 100.558620689655 | 294 | 42 | 99 | 10 | 4 | 290 | 3453834 | 3454123 | MAG: uncultured Planctomycetota bacterium isolate MFD04580.bin.c.2 genome assembly, chromosome: 1 | blastn | 29162 | 239 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | uncultured Planctomycetota bacterium | |||||
| 5990260 | 5990260 | PRJNA906294_P_NODE_170185_length_286_cov_1.399061_g166069_i0 | PRJNA906294 | 170185 | 286 | 1.399061 | 4.00131446 | Adhaeretor mobilis | 1930276 | Bacteria | Bacteria | 52.8 | 0.026 | NTclustered | gi|1712449852|gb|CP036263.1| | 1930276 | g166069 | i0 | 100 | 0.0979020979020979 | 28 | 0 | 10 | 0 | 121 | 148 | 1256132 | 1256159 | Adhaeretor mobilis strain HG15A2 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Adhaeretor | Adhaeretor mobilis | |
| 9814743 | 9814743 | PRJNA906294_P_NODE_164608_length_292_cov_3.584475_g160492_i0 | PRJNA906294 | 164608 | 292 | 3.584475 | 10.466667 | uncultured Planctomycetaceae bacterium | 100233 | Bacteria | Bacteria | 213 | 1.17e-50 | NTclustered | gi|2874254106|emb|OY970189.1| | 100233 | g160492 | i0 | 85.784 | 135.753424657534 | 204 | 25 | 69 | 4 | 27 | 228 | 4317090 | 4317291 | MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 | blastn | 39640 | 213 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | uncultured Planctomycetaceae bacterium | ||
| 13640810 | 13640810 | PRJNA906294_P_NODE_179351_length_276_cov_1.339901_g175235_i0 | PRJNA906294 | 179351 | 276 | 1.339901 | 3.69812676 | Fontisphaera persica | 2974023 | Bacteria | Bacteria | 324 | 4.87e-84 | NTclustered | gi|2439237958|gb|CP116615.1| | 2974023 | g175235 | i0 | 87.9 | 41.2898550724638 | 281 | 27 | 99 | 5 | 3 | 276 | 3861594 | 3861874 | Fontisphaera persica strain B-154 chromosome, complete genome | blastn | 11396 | 324 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Limisphaerales | Fontisphaeraceae | Fontisphaera | Fontisphaera persica | |
| 14915720 | 14915720 | PRJNA906294_P_NODE_205112_length_250_cov_4.124294_g200996_i0 | PRJNA906294 | 205112 | 250 | 4.124294 | 10.310735 | Candidatus Xiphinematobacter sp. Idaho Grape | 1704307 | Bacteria | Bacteria | 329 | 9.34e-86 | NTclustered | gi|939198278|gb|CP012665.1| | 1704307 | g200996 | i0 | 90.476 | 163.316 | 252 | 20 | 99 | 3 | 1 | 249 | 15769 | 15519 | Candidatus Xiphinematobacter sp. Idaho Grape, complete genome | blastn | 40829 | 329 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Candidatus Xiphinematobacter | Candidatus Xiphinematobacter sp. Idaho Grape | |||
| 17826396 | 17826396 | PRJNA906294_P_NODE_77354_length_506_cov_1.302540_g73245_i0 | PRJNA906294 | 77354 | 506 | 1.30254 | 6.5908524 | Schlesneria | 656899 | Bacteria | Bacteria | 462 | 1.93e-125 | NTclustered | gi|12583970|gb|AF245374.1|AF245374 | 149589 | g73245 | i0 | 83.562 | 372.509881422925 | 511 | 66 | 100 | 12 | 1 | 506 | 586 | 89 | Planctomycete str. 639 23S ribosomal RNA gene, partial sequence | blastn | 188490 | 462 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | planctomycete str. 639 | ||
| 18739463 | 18739463 | PRJNA906294_P_NODE_211755_length_248_cov_0.868571_g207639_i0 | PRJNA906294 | 211755 | 248 | 0.868571 | 2.15405608 | uncultured Planctomycetaceae bacterium | 100233 | Bacteria | Bacteria | 300 | 7.26e-77 | NTclustered | gi|2874253948|emb|OY970273.1| | 100233 | g207639 | i0 | 88.71 | 85.875 | 248 | 25 | 99 | 3 | 1 | 246 | 2621794 | 2622040 | MAG: uncultured Planctomycetaceae bacterium isolate MFD09495.bin.c.1 genome assembly, chromosome: 1 | blastn | 21297 | 300 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | uncultured Planctomycetaceae bacterium | ||
| 23838766 | 23838766 | PRJNA906294_P_NODE_157359_length_301_cov_4.859649_g153243_i0 | PRJNA906294 | 157359 | 301 | 4.859649 | 14.62754349 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 372 | 1.89e-98 | NTclustered | gi|2874254020|emb|OY970345.1| | 412056 | g153243 | i0 | 89.037 | 222.129568106312 | 301 | 31 | 100 | 2 | 1 | 301 | 3894530 | 3894828 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 | blastn | 66861 | 372 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;