RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA904835" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

bioproject 1

  • PRJNA904835 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7625325 7625325 PRJNA904835_P_NODE_16506_length_506_cov_1.905312_g16252_i0 PRJNA904835 16506 506 1.905312 9.64087872 Alphanecrovirus 1299309 Viruses Viruses 54.7 0.014   NTclustered gi|2273761011|gb|OL472227.1| 12054 g16252 i0 100 0.114624505928854 29 0 6 0 159 187 1284 1256 MAG: Unidentified tobacco necrosis virus isolate PAR19AT, complete genome blastn 58 54.7 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   unidentified tobacco necrosis virus
18735190 18735190 PRJNA904835_P_NODE_56635_length_244_cov_0.900585_g56379_i0 PRJNA904835 56635 244 0.900585 2.1974274 aphis 2 virus 3041036 Viruses Viruses 451 1.86e-122   NTclustered gi|2638767858|tpg|BK063262.1| 3041036 g56379 i0 100 1 244 0 100 0 1 244 1933 2176 TPA_asm: Aphis 2 virus replicase protein gene, complete cds blastn 244 451 1 Viruses               aphis 2 virus
18735198 18735198 PRJNA904835_P_NODE_56955_length_243_cov_2.258824_g56699_i0 PRJNA904835 56955 243 2.258824 5.48894232 Begomovirus nicotianae 3426882 Viruses Viruses 58.4 4.71e-4   NTclustered gi|1817986057|gb|MN481176.1| 180526 g56699 i0 100 5.12345679012346 31 0 13 0 105 135 2732 2702 Tobacco curly shoot virus isolate YN6303 clone 9, complete genome blastn 1245 58.4 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus nicotianae
20373694 20373694 PRJNA904835_P_NODE_35596_length_323_cov_1.540000_g35340_i0 PRJNA904835 35596 323 1.54 4.9742 Gammaretrovirus 153135 Viruses Viruses 592 1.4499999999999999e-164   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g35340 i0 99.69 100 323 1 100 0 1 323 4050 3728 Moloney murine leukemia virus, complete genome blastn 32300 592 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;