RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA904835" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA904835 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8535653 8535653 PRJNA904835_P_NODE_24887_length_399_cov_1.702454_g24632_i0 PRJNA904835 24887 399 1.702454 6.79279146 Mycoplasmopsis maculosa 114885 Bacteria Bacteria 78.7 6.31e-10   NTclustered gi|1563804680|emb|LR215037.1| 114885 g24632 i0 74.731 0.466165413533835 186 41 46 6 203 384 310396 310579 Mycoplasma maculosum strain NCTC10168 genome assembly, chromosome: 1 blastn 186 78.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis maculosa
13636506 13636506 PRJNA904835_P_NODE_26591_length_384_cov_1.401929_g26335_i0 PRJNA904835 26591 384 1.401929 5.38340736 Mycoplasmopsis maculosa 114885 Bacteria Bacteria 67.6 1.31e-6   NTclustered gi|1563804680|emb|LR215037.1| 114885 g26335 i0 93.333 0.1171875 45 3 12 0 69 113 310496 310452 Mycoplasma maculosum strain NCTC10168 genome assembly, chromosome: 1 blastn 45 67.6 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis maculosa
17460464 17460464 PRJNA904835_P_NODE_10134_length_670_cov_1.425461_g9898_i0 PRJNA904835 10134 670 1.425461 9.5505887 Mycoplasmopsis maculosa 114885 Bacteria Bacteria 75 1.42e-8   NTclustered gi|1563804680|emb|LR215037.1| 114885 g9898 i0 78.761 0.16865671641791 113 22 17 2 296 407 310385 310496 Mycoplasma maculosum strain NCTC10168 genome assembly, chromosome: 1 blastn 113 75 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis maculosa
25109689 25109689 PRJNA904835_P_NODE_56020_length_245_cov_0.895349_g55764_i0 PRJNA904835 56020 245 0.895349 2.19360505 Metamycoplasma alkalescens 45363 Bacteria Bacteria 448 2.41e-121   NTclustered gi|1450418660|emb|LS991949.1| 45363 g55764 i0 99.592 1 245 1 100 0 1 245 458379 458135 Mycoplasma alkalescens strain NCTC10135 genome assembly, chromosome: 1 blastn 245 448 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma alkalescens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;