RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA904835" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA904835 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11087352 11087352 PRJNA904835_P_NODE_58149_length_242_cov_0.911243_g57893_i0 PRJNA904835 58149 242 0.911243 2.20520806 Aerococcus urinaeequi 51665 Bacteria Bacteria 431 2.4e-116   NTclustered gi|2437762991|gb|CP116590.1| 51665 g57893 i0 98.76 5 242 3 100 0 1 242 1256001 1255760 Aerococcus urinaeequi strain K79-1 chromosome, complete genome blastn 1210 431 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus urinaeequi
16186178 16186178 PRJNA904835_P_NODE_43813_length_282_cov_0.904306_g43557_i0 PRJNA904835 43813 282 0.904306 2.55014292 Streptococcus thermophilus 1308 Bacteria Bacteria 416 8.009999999999998e-112   NTclustered gi|1239731491|gb|CP017064.1| 1308 g43557 i0 93.286 574.503546099291 283 17 100 2 1 282 21938 21657 Streptococcus thermophilus strain ST3 chromosome, complete genome blastn 162010 416 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus
24198794 24198794 PRJNA904835_P_NODE_17759_length_486_cov_1.077482_g17504_i0 PRJNA904835 17759 486 1.077482 5.23656252 Lachnospiraceae 186803 Bacteria Bacteria 52.8 0.047   NTclustered gi|2299353445|gb|CP102274.1| 154046 g17504 i0 100 0.121399176954733 28 0 6 0 399 426 3222005 3222032 Hungatella hathewayi strain DSM 13479 chromosome, complete genome blastn 59 52.8 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella hathewayi
25474137 25474137 PRJNA904835_P_NODE_55040_length_246_cov_0.890173_g54784_i0 PRJNA904835 55040 246 0.890173 2.18982558 Enterococcus 1350 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|2437787960|gb|CP116571.1| 1351 g54784 i0 100 100 246 0 100 0 1 246 2245633 2245388 Enterococcus faecalis strain K190-1 chromosome, complete genome blastn 24600 455 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;