RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA904835" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA904835 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1247526 1247526 PRJNA904835_P_NODE_51001_length_251_cov_0.865169_g50745_i0 PRJNA904835 51001 251 0.865169 2.17157419 Amycolatopsis 1813 Bacteria Bacteria 147 1.01e-30   NTclustered gi|2326010688|gb|CP100416.1| 33910 g50745 i0 77.959 84.1354581673307 245 47 97 7 2 244 7700068 7700307 Amycolatopsis mediterranei strain ISP5501 chromosome blastn 21118 147 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis mediterranei
1247557 1247557 PRJNA904835_P_NODE_55821_length_245_cov_0.895349_g55565_i0 PRJNA904835 55821 245 0.895349 2.19360505 Rhodococcus 1827 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|2258906618|dbj|AP018733.1| 1833 g55565 i0 100 412.379591836735 245 0 100 0 1 245 4075433 4075189 Rhodococcus erythropolis JCM 2895 DNA, complete genome blastn 101033 453 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis
16549946 16549946 PRJNA904835_P_NODE_44993_length_276_cov_1.246305_g44737_i0 PRJNA904835 44993 276 1.246305 3.4398018 Cutibacterium 1912216 Bacteria Bacteria 494 3.51e-135   NTclustered gi|966542502|gb|CP012354.1| 1747 g44737 i0 98.913 50.9492753623188 276 3 100 0 1 276 1067285 1067010 Cutibacterium acnes strain PA_12_1_L1 chromosome, complete genome blastn 14062 494 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
23835703 23835703 PRJNA904835_P_NODE_51059_length_251_cov_0.865169_g50803_i0 PRJNA904835 51059 251 0.865169 2.17157419 Corynebacterium afermentans 38286 Bacteria Bacteria 453 5.34e-123   NTclustered gi|2531253808|gb|CP046530.1| 144184 g50803 i0 99.203 386.745019920319 251 2 100 0 1 251 640353 640103 Corynebacterium afermentans subsp. lipophilum strain DSM 44282 chromosome, complete genome blastn 97073 453 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium afermentans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;