RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA904835" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA904835 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3799288 3799288 PRJNA904835_P_NODE_21523_length_433_cov_1.066667_g21268_i0 PRJNA904835 21523 433 1.066667 4.61866811 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.042   NTclustered gi|66818750|ref|XM_637943.1| 352472 g21268 i0 100 0.210161662817552 28 0 6 0 2 29 2378 2351 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0276689) mRNA, complete cds blastn 91 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
5986411 5986411 PRJNA904835_P_NODE_37005_length_315_cov_1.884298_g36749_i0 PRJNA904835 37005 315 1.884298 5.9355387 Dictyostelium purpureum 5786 Evosea other_Eukaryota 206 2.1399999999999994e-48   NTclustered gi|330801204|ref|XM_003288572.1| 5786 g36749 i0 81.967 18.8603174603175 244 42 77 2 55 297 18 260 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_92126), mRNA blastn 5941 206 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;