RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA902848" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA902848 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4710549 4710549 PRJNA902848_P_NODE_17464_length_246_cov_0.901734_g17414_i0 PRJNA902848 17464 246 0.901734 2.21826564 Opitutus sp. GAS368 1882749 Bacteria Bacteria 52.8 0.022   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g17414 i0 96.875 0.130081300813008 32 0 13 1 147 177 328490 328459 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 32 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
14909935 14909935 PRJNA902848_P_NODE_19592_length_243_cov_0.917647_g19542_i0 PRJNA902848 19592 243 0.917647 2.22988221 Verrucomicrobia bacterium IMCC26134 1637999 Bacteria Bacteria 183 7.44e-42   NTclustered gi|807238858|gb|CP011265.1| 1637999 g19542 i0 82.381 0.864197530864197 210 37 86 0 1 210 785933 786142 Verrucomicrobia bacterium IMCC26134, complete genome blastn 210 183 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
23834181 23834181 PRJNA902848_P_NODE_20159_length_242_cov_0.923077_g20109_i0 PRJNA902848 20159 242 0.923077 2.23384634 Termitidicoccus mucosus 1184151 Bacteria Bacteria 147 9.72e-31   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g20109 i0 88.71 29.0702479338843 124 8 50 6 120 240 1505747 1505627 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 7035 147 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;