RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA902848" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA902848 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7260328 7260328 PRJNA902848_P_NODE_9886_length_286_cov_1.464789_g9836_i0 PRJNA902848 9886 286 1.464789 4.18929654 Diplogasteroides magnus 560213 Nematoda Nematoda 171 6.99e-38   NTclustered gi|256709124|gb|GQ422214.1| 560213 g9836 i0 78.824 8.45804195804196 255 52 89 2 31 284 725 472 Diplogasteroides magnus large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 2419 171 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteroididae Diplogasteroides Diplogasteroides magnus
8534854 8534854 PRJNA902848_P_NODE_14587_length_251_cov_0.876404_g14537_i0 PRJNA902848 14587 251 0.876404 2.19977404 Tylopharynx sp. WEM-2009 669147 Nematoda Nematoda 132 2.84e-26   NTclustered gi|256709336|gb|GQ422343.1| 669147 g14537 i0 81.875 9.72908366533865 160 25 63 4 92 249 44 201 Tylopharynx sp. WEM-2009 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2442 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylopharyngidae Tylopharynx Tylopharynx sp. WEM-2009

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;