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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA902848" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 12 ✖

bioproject 1

  • PRJNA902848 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4710393 4710393 PRJNA902848_P_NODE_10244_length_282_cov_1.119617_g10194_i0 PRJNA902848 10244 282 1.119617 3.15731994 Chlamydomonas reinhardtii 3055 Plants Plants 167 8.9e-37   NTclustered gi|2082253475|ref|XM_001695212.2| 3055 g10194 i0 79.915 3.82269503546099 234 41 82 6 2 232 1589 1819 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_09g386750v5), mRNA blastn 1078 167 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4710781 4710781 PRJNA902848_P_NODE_8304_length_307_cov_1.333333_g8254_i0 PRJNA902848 8304 307 1.333333 4.09333231 Coccomyxa subellipsoidea 248742 Plants Plants 211 4.47e-50   NTclustered gi|545367524|ref|XM_005648521.1| 574566 g8254 i0 83.475 8.73615635179153 236 29 75 10 1 231 367 137 Coccomyxa subellipsoidea C-169 chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit mRNA blastn 2682 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
7260058 7260058 PRJNA902848_P_NODE_17346_length_246_cov_1.271676_g17296_i0 PRJNA902848 17346 246 1.271676 3.12832296 Chlamydomonas reinhardtii 3055 Plants Plants 267 7.289999999999999e-67   NTclustered gi|27542564|gb|AY171229.1| 3055 g17296 i0 91.282 73.5325203252033 195 17 79 0 52 246 792 598 Chlamydomonas reinhardtii light-harvesting complex II protein (Lhcb) mRNA, complete cds; nuclear gene for chloroplast product blastn 18089 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7260069 7260069 PRJNA902848_P_NODE_17806_length_246_cov_0.901734_g17756_i0 PRJNA902848 17806 246 0.901734 2.21826564 Coccomyxa subellipsoidea 248742 Plants Plants 250 7.34e-62   NTclustered gi|545359564|ref|XM_005645183.1| 574566 g17756 i0 90.86 2.38211382113821 186 17 76 0 38 223 3 188 Coccomyxa subellipsoidea C-169 ribosomal protein L38 component of cytosolic 80S ribosome and 60S large subunit partial mRNA blastn 586 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
14001068 14001068 PRJNA902848_P_NODE_6451_length_339_cov_1.109023_g6401_i0 PRJNA902848 6451 339 1.109023 3.75958797 Hydrodictyaceae 3103 Plants Plants 165 3.94e-36   NTclustered gi|21040380|gb|AF183479.2| 3105 g6401 i0 95.192 29.7374631268437 104 5 31 0 236 339 2493 2596 Pediastrum duplex strain UTEX LB 1364 28S ribosomal RNA gene, partial sequence blastn 10081 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
14910087 14910087 PRJNA902848_P_NODE_7072_length_327_cov_1.535433_g7022_i0 PRJNA902848 7072 327 1.535433 5.02086591 Monoraphidium neglectum 145388 Plants Plants 300 9.95e-77   NTclustered gi|926786183|ref|XM_014046112.1| 145388 g7022 i0 83.18 31.4770642201835 327 55 100 0 1 327 82 408 Monoraphidium neglectum 40S ribosomal protein S9-2 mRNA blastn 10293 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
16184801 16184801 PRJNA902848_P_NODE_18113_length_245_cov_0.906977_g18063_i0 PRJNA902848 18113 245 0.906977 2.22209365 Chlamydomonas reinhardtii 3055 Plants Plants 453 5.1900000000000006e-123   NTclustered gi|2082251605|ref|XM_001701987.2| 3055 g18063 i0 100 1 245 0 100 0 1 245 3120 3364 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g353450v5), mRNA blastn 245 453 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18733506 18733506 PRJNA902848_P_NODE_19755_length_243_cov_0.864706_g19705_i0 PRJNA902848 19755 243 0.864706 2.10123558 Coccomyxa subellipsoidea 248742 Plants Plants 230 9.43e-56   NTclustered gi|545362485|ref|XM_005646412.1| 574566 g19705 i0 83.817 12.0781893004115 241 39 99 0 3 243 1180 940 Coccomyxa subellipsoidea C-169 phosphoglycerate kinase precursor partial mRNA blastn 2935 230 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
20008604 20008604 PRJNA902848_P_NODE_17756_length_246_cov_0.901734_g17706_i0 PRJNA902848 17756 246 0.901734 2.21826564 Coccomyxa subellipsoidea 248742 Plants Plants 292 1.2e-74   NTclustered gi|545367589|ref|XM_005648552.1| 574566 g17706 i0 91.163 1.1869918699187 215 19 87 0 1 215 114 328 Coccomyxa subellipsoidea C-169 ribosomal protein L37 component of cytosolic 80S ribosome and 60S large subunit mRNA blastn 292 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
21284148 21284148 PRJNA902848_P_NODE_8457_length_305_cov_1.439655_g8407_i0 PRJNA902848 8457 305 1.439655 4.39094775 Auxenochlorella pyrenoidosa 3078 Plants Plants 433 8.69e-117   NTclustered gi|49473447|gb|AY646197.1| 3078 g8407 i0 92.409 20.0295081967213 303 23 99 0 3 305 374 72 Chlorella pyrenoidosa chloroplast light-harvesting complex II (Lhc II) mRNA, partial cds; nuclear gene for chloroplast product blastn 6109 433 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
22558686 22558686 PRJNA902848_P_NODE_10038_length_284_cov_1.563981_g9988_i0 PRJNA902848 10038 284 1.563981 4.44170604 Tetraselmis sp. RG-15 65602 Plants Plants 259 1.44e-64   NTclustered gi|2407313|gb|AF017998.1|AF017998 65602 g9988 i0 83.755 33.3028169014084 277 41 97 3 8 282 1442 1168 Tetraselmis sp. RG-15 chlorophyll a/b binding protein (LHCPII) gene, complete cds blastn 9458 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis sp. RG-15
23834014 23834014 PRJNA902848_P_NODE_12659_length_256_cov_1.240437_g12609_i0 PRJNA902848 12659 256 1.240437 3.17551872 Auxenochlorella pyrenoidosa 3078 Plants Plants 379 9.4e-101   NTclustered gi|49473447|gb|AY646197.1| 3078 g12609 i0 93.359 74.7578125 256 17 100 0 1 256 271 526 Chlorella pyrenoidosa chloroplast light-harvesting complex II (Lhc II) mRNA, partial cds; nuclear gene for chloroplast product blastn 19138 379 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;