RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA902848" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA902848 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11085572 11085572 PRJNA902848_P_NODE_16009_length_248_cov_3.542857_g15959_i0 PRJNA902848 16009 248 3.542857 8.78628536 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 274 4.399999999999999e-69   NTclustered gi|470421212|ref|XM_004337322.1| 1257118 g15959 i0 89.401 79.4879032258064 217 23 88 0 1 217 217 1 Acanthamoeba castellanii str. Neff actin, putative (ACA1_328920), partial mRNA blastn 19713 274 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21283908 21283908 PRJNA902848_P_NODE_1577_length_567_cov_1.836032_g1528_i0 PRJNA902848 1577 567 1.836032 10.41030144 Vannella sp. 1973054 Discosea other_Eukaryota 990 0   NTclustered gi|1376098864|gb|MH182996.1| 1973054 g1528 i0 97.887 89.8130511463845 568 11 100 1 1 567 1274 707 Vannella sp. isolate DD141 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 50924 990 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.
21284117 21284117 PRJNA902848_P_NODE_7037_length_328_cov_1.223529_g6987_i0 PRJNA902848 7037 328 1.223529 4.01317512 Vannella simplex 197532 Discosea other_Eukaryota 601 2.4399999999999998e-167   NTclustered gi|25991989|gb|AF486078.1| 197532 g6987 i0 99.695 100.917682926829 328 1 100 0 1 328 426 99 Vannella simplex isolate 51 small subunit ribosomal RNA gene, partial sequence blastn 33101 601 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
22559031 22559031 PRJNA902848_P_NODE_5058_length_370_cov_1.303030_g5008_i0 PRJNA902848 5058 370 1.30303 4.821211 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 300 1.14e-76   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g5008 i0 83.974 74.7054054054054 312 50 84 0 59 370 417 106 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 27641 300 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23834027 23834027 PRJNA902848_P_NODE_13059_length_253_cov_0.866667_g13009_i0 PRJNA902848 13059 253 0.866667 2.19266751 Acytostelium subglobosum 361139 Evosea other_Eukaryota 193 1.3e-44   NTclustered gi|831757828|ref|XM_012893698.1| 1410327 g13009 i0 82.222 0.889328063241107 225 38 89 2 5 228 1137 914 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 225 193 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;