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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA902515" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA902515 · 20 ✖

analysis 1

  • blastn · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
881494 881494 PRJNA902515_P_NODE_9401_length_272_cov_1.472362_g9378_i0 PRJNA902515 9401 272 1.472362 4.00482464 Oryza sativa 4530 Plants Plants 503 5.729999999999998e-138   NTclustered gi|32982681|dbj|AK072658.1| 39947 g9378 i0 100 6.96691176470588 272 0 100 0 1 272 329 58 Oryza sativa Japonica Group cDNA clone:J023134D11, full insert sequence blastn 1895 503 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
1246643 1246643 PRJNA902515_P_NODE_14001_length_247_cov_0.896552_g13978_i0 PRJNA902515 14001 247 0.896552 2.21448344 Triticum 4564 Plants Plants 457 4.05e-124   NTclustered gi|2123742633|ref|XM_044495496.1| 4565 g13978 i0 100 51.7611336032389 247 0 100 0 1 247 595 841 PREDICTED: Triticum aestivum thioredoxin F, chloroplastic-like (LOC123071915), mRNA blastn 12785 457 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
1246660 1246660 PRJNA902515_P_NODE_5541_length_333_cov_1.200000_g5518_i0 PRJNA902515 5541 333 1.2 3.996 Eukaryota 2759 Plants Plants 610 4.13e-170   NTclustered gi|194703603|gb|BT040881.1| 4577 g5518 i0 99.7 55.4174174174174 333 1 100 0 1 333 995 1327 Zea mays full-length cDNA clone ZM_BFc0144J03 mRNA, complete cds blastn 18454 610 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
5074780 5074780 PRJNA902515_P_NODE_14664_length_245_cov_0.906977_g14641_i0 PRJNA902515 14664 245 0.906977 2.22209365 Triticum 4564 Plants Plants 381 2.4799999999999995e-101   NTclustered gi|383100753|emb|HE774675.1| 4565 g14641 i0 94.694 38.6 245 13 100 0 1 245 1579 1335 Triticum aestivum chromosome arm 3DS-specific BAC library, contig ctg1484 blastn 9457 381 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
9809076 9809076 PRJNA902515_P_NODE_11528_length_252_cov_0.871508_g11505_i0 PRJNA902515 11528 252 0.871508 2.19620016 Triticum dicoccoides 85692 Plants Plants 455 1.49e-123   NTclustered gi|1931521616|ref|XM_037573914.1| 85692 g11505 i0 99.206 15.6587301587302 252 2 100 0 1 252 754 1005 PREDICTED: Triticum dicoccoides glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic-like (LOC119295487), transcript variant X4, mRNA blastn 3946 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum dicoccoides
10175192 10175192 PRJNA902515_P_NODE_15488_length_243_cov_0.917647_g15465_i0 PRJNA902515 15488 243 0.917647 2.22988221 Poaceae 4479 Plants Plants 444 3.09e-120   NTclustered gi|1214171912|gb|KY636002.1| 4483 g15465 i0 99.588 189 243 1 100 0 1 243 96311 96553 Aegilops bicornis voucher AE 788 chloroplast, partial genome blastn 45927 444 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Aegilops Aegilops bicornis
13634838 13634838 PRJNA902515_P_NODE_10651_length_257_cov_2.315217_g10628_i0 PRJNA902515 10651 257 2.315217 5.95010769 Arabidopsis thaliana 3702 Plants Plants 475 1.1699999999999999e-129   NTclustered gi|1360523775|emb|LT937414.1| 3702 g10628 i0 100 90.9961089494163 257 0 100 0 1 257 14 270 Arabidopsis thaliana other for ATSL021720 blastn 23386 475 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
13634982 13634982 PRJNA902515_P_NODE_15771_length_243_cov_0.917647_g15748_i0 PRJNA902515 15771 243 0.917647 2.22988221 Triticum aestivum 4565 Plants Plants 449 6.65e-122   NTclustered gi|241988926|dbj|AK330148.1| 4565 g15748 i0 100 9.23868312757202 243 0 100 0 1 243 503 261 Triticum aestivum cDNA, clone: SET1_E08, cultivar: Chinese Spring blastn 2245 449 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
14000583 14000583 PRJNA902515_P_NODE_14391_length_246_cov_0.901734_g14368_i0 PRJNA902515 14391 246 0.901734 2.21826564 Glycine 3846 Plants Plants 449 6.74e-122   NTclustered gi|2027471614|ref|XM_003526881.5| 3847 g14368 i0 99.593 99.7520325203252 246 1 100 0 1 246 2617 2372 PREDICTED: Glycine max chaperone protein ClpC, chloroplastic (LOC100804035), transcript variant X2, mRNA blastn 24539 449 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
14000601 14000601 PRJNA902515_P_NODE_7891_length_292_cov_1.575342_g7868_i0 PRJNA902515 7891 292 1.575342 4.59999864 Triticum 4564 Plants Plants 540 4.74e-149   NTclustered gi|1251759002|dbj|AK457535.1| 4565 g7868 i0 100 99.1438356164384 292 0 100 0 1 292 588 297 Triticum aestivum mRNA, clone: tplb0016f17, cultivar Chinese Spring blastn 28950 540 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
14909051 14909051 PRJNA902515_P_NODE_12832_length_249_cov_0.886364_g12809_i0 PRJNA902515 12832 249 0.886364 2.20704636 Triticum aestivum 4565 Plants Plants 243 1.25e-59   NTclustered gi|300681568|emb|FN564435.1| 4565 g12809 i0 85.232 10.3574297188755 237 34 95 1 9 245 488149 487914 Triticum aestivum chromosome 3B-specific BAC library, contig ctg1030b blastn 2579 243 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
14909058 14909058 PRJNA902515_P_NODE_13052_length_249_cov_0.886364_g13029_i0 PRJNA902515 13052 249 0.886364 2.20704636 Armeria pungens 71827 Plants Plants 54.7 0.006   NTclustered gi|2919994823|emb|OZ238830.1| 71827 g13029 i0 94.444 0.144578313253012 36 1 14 1 200 235 28874 28840 Armeria pungens genome assembly, organelle: plastid:chloroplast blastn 36 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Plumbaginaceae Armeria Armeria pungens
17459427 17459427 PRJNA902515_P_NODE_14194_length_246_cov_0.901734_g14171_i0 PRJNA902515 14194 246 0.901734 2.21826564 Triticum aestivum 4565 Plants Plants 383 6.94e-102   NTclustered gi|1282796720|gb|MG560140.1| 4565 g14171 i0 94.737 19.5243902439024 247 12 100 1 1 246 227263 227509 Triticum aestivum gamma gliadin-A1, gamma gliadin-A3, gamma gliadin-A4, and LMW-A2 genes, complete cds blastn 4803 383 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
21283145 21283145 PRJNA902515_P_NODE_13277_length_248_cov_0.891429_g13254_i0 PRJNA902515 13277 248 0.891429 2.21074392 Triticum aestivum 4565 Plants Plants 265 2.6499999999999997e-66   NTclustered gi|164455201|dbj|AB298186.1| 4565 g13254 i0 86 2.98387096774194 250 32 100 3 1 248 9487 9239 Triticum aestivum genes for P450, putative ankyrin repeat protein, P450, complete cds, clone: TAC TaBx3D-TaBx4D blastn 740 265 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
21283179 21283179 PRJNA902515_P_NODE_14737_length_245_cov_0.906977_g14714_i0 PRJNA902515 14737 245 0.906977 2.22209365 Triticum dicoccoides 85692 Plants Plants 453 5.1900000000000006e-123   NTclustered gi|1931482503|ref|XR_005135681.1| 85692 g14714 i0 100 4 245 0 100 0 1 245 794 550 PREDICTED: Triticum dicoccoides uncharacterized LOC119275419 (LOC119275419), ncRNA blastn 980 453 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum dicoccoides
22558120 22558120 PRJNA902515_P_NODE_14338_length_246_cov_0.901734_g14315_i0 PRJNA902515 14338 246 0.901734 2.21826564 Oryza sativa 4530 Plants Plants 455 1.4500000000000002e-123   NTclustered gi|32971966|dbj|AK061948.1| 39947 g14315 i0 100 10.3983739837398 246 0 100 0 1 246 766 521 Oryza sativa Japonica Group cDNA clone:001-042-E07, full insert sequence blastn 2558 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
22558121 22558121 PRJNA902515_P_NODE_14378_length_246_cov_0.901734_g14355_i0 PRJNA902515 14378 246 0.901734 2.21826564 Triticum aestivum 4565 Plants Plants 453 5.2100000000000006e-123   NTclustered gi|2123758267|ref|XM_044499944.1| 4565 g14355 i0 100 8.86178861788618 245 0 99 0 2 246 748 504 PREDICTED: Triticum aestivum glycine-rich cell wall structural protein 1.8-like (LOC123077648), mRNA blastn 2180 453 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
22924278 22924278 PRJNA902515_P_NODE_11778_length_252_cov_0.871508_g11755_i0 PRJNA902515 11778 252 0.871508 2.19620016 Triticum 4564 Plants Plants 466 6.89e-127   NTclustered gi|2123823865|ref|XM_044524175.1| 4565 g11755 i0 100 16.5714285714286 252 0 100 0 1 252 2166 1915 PREDICTED: Triticum aestivum stromal 70 kDa heat shock-related protein, chloroplastic-like (LOC123102745), mRNA blastn 4176 466 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
23833349 23833349 PRJNA902515_P_NODE_14079_length_246_cov_1.768786_g14056_i0 PRJNA902515 14079 246 1.768786 4.35121356 Arabidopsis thaliana 3702 Plants Plants 455 1.4500000000000002e-123   NTclustered gi|902788|gb|U23795.1|ATU23795 3702 g14056 i0 100 24.6219512195122 246 0 100 0 1 246 744 989 Arabidopsis thaliana IAA-amino acid hydrolase homolog ILL1 (ILL1) mRNA, complete cds blastn 6057 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
24198191 24198191 PRJNA902515_P_NODE_6019_length_324_cov_0.932271_g5996_i0 PRJNA902515 6019 324 0.932271 3.02055804 Triticum 4564 Plants Plants 571 1.8899999999999993e-158   NTclustered gi|2123939371|ref|XM_044569817.1| 4565 g5996 i0 98.457 95.3796296296296 324 5 100 0 1 324 170 493 PREDICTED: Triticum aestivum plastocyanin, chloroplastic-like (LOC123150017), mRNA blastn 30903 571 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;