RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA902515" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 12 ✖

bioproject 1

  • PRJNA902515 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
881357 881357 PRJNA902515_P_NODE_41_length_2064_cov_86.160221_g40_i0 PRJNA902515 41 2064 86.160221 1778.34696144 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 3295 0   NTclustered gi|2274983416|gb|OP038912.1| 5725 g40 i0 95.549 28.5968992248062 2067 78 99 13 1 2060 2060 1 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 59024 3295 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
2522252 2522252 PRJNA902515_P_NODE_2102_length_484_cov_118.418491_g2079_i0 PRJNA902515 2102 484 118.418491 573.14549644 Tritrichomonas 5723 Parabasalia other_Eukaryota 811 0   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g2079 i0 100 98.4586776859504 439 0 91 0 46 484 1 439 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 47654 811 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
2522266 2522266 PRJNA902515_P_NODE_8982_length_277_cov_5.568627_g8959_i0 PRJNA902515 8982 277 5.568627 15.42509679 Tritrichomonas 5723 Parabasalia other_Eukaryota 501 2.11e-137   NTclustered gi|2207136540|gb|OM977109.1| 5726 g8959 i0 99.635 98.028880866426 274 1 99 0 1 274 333 60 Tritrichomonas muris isolate CCM-16 mouse small subunit ribosomal RNA gene, partial sequence blastn 27154 501 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
3432083 3432083 PRJNA902515_P_NODE_7203_length_302_cov_6.349345_g7180_i0 PRJNA902515 7203 302 6.349345 19.1750219 uncultured Parabasalia sp. 285696 Parabasalia other_Eukaryota 399 8.719999999999998e-107   NTclustered gi|218117490|dbj|AB443598.1| 285696 g7180 i0 90.759 100.443708609272 303 22 100 5 1 302 324 27 Uncultured parabasalid eukaryote gene for small subunit rRNA, partial sequence, clone: Cp10 blastn 30334 399 1 Eukaryota Metamonada   Parabasalia         uncultured Parabasalia sp.
7259207 7259207 PRJNA902515_P_NODE_10626_length_258_cov_1.221622_g10603_i0 PRJNA902515 10626 258 1.221622 3.15178476 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 353 5.749999999999998e-93   NTclustered gi|2806476969|ref|XM_068510124.1| 1144522 g10603 i0 91.44 1.9922480620155 257 22 99 0 1 257 1628 1372 Tritrichomonas foetus Heat shock protein 90-2 (TRFO_35204), partial mRNA blastn 514 353 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
10175194 10175194 PRJNA902515_P_NODE_16468_length_200_cov_13.440945_g16445_i0 PRJNA902515 16468 200 13.440945 26.88189 Tritrichomonas 5723 Parabasalia other_Eukaryota 370 4.22e-98   NTclustered gi|2745708036|gb|PP937747.1| 1144522 g16445 i0 100 98.335 200 0 100 0 1 200 24 223 Tritrichomonas foetus isolate Pet cat-90 internal transcribed spacer region, partial sequence blastn 19667 370 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
12360293 12360293 PRJNA902515_P_NODE_4190_length_371_cov_5.483221_g4167_i0 PRJNA902515 4190 371 5.483221 20.34274991 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 483 1.0599999999999998e-131   NTclustered gi|2806486406|ref|XM_068512933.1| 1144522 g4167 i0 90.659 54.7789757412399 364 32 98 2 7 369 1311 949 Tritrichomonas foetus Heat shock cognate 71 kDa protein (HSPA8), partial mRNA blastn 20323 483 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
13634984 13634984 PRJNA902515_P_NODE_15851_length_242_cov_1.585799_g15828_i0 PRJNA902515 15851 242 1.585799 3.83763358 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 339 1.49e-88   NTclustered gi|2794866584|ref|XM_067916546.1| 135588 g15828 i0 92.405 22.3264462809917 237 18 98 0 6 242 254 18 Histomonas meleagridis Histone H2A (GO595_003516), partial mRNA blastn 5403 339 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
16184228 16184228 PRJNA902515_P_NODE_8373_length_285_cov_3.589623_g8350_i0 PRJNA902515 8373 285 3.589623 10.23042555 Dientamoeba fragilis 43352 Parabasalia other_Eukaryota 230 1.1299999999999995e-55   NTclustered gi|506956258|gb|KC967122.1| 43352 g8350 i0 82.129 3.44912280701754 263 45 92 2 24 285 547 286 Dientamoeba fragilis Elongation factor 1 alpha gene, partial cds blastn 983 230 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Dientamoeba Dientamoeba fragilis
16549157 16549157 PRJNA902515_P_NODE_3693_length_389_cov_3.655063_g3670_i0 PRJNA902515 3693 389 3.655063 14.21819507 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 302 3.34e-77   NTclustered gi|2274983416|gb|OP038912.1| 5725 g3670 i0 80.867 9.1439588688946 392 67 100 8 1 389 809 1195 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 3557 302 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
17824139 17824139 PRJNA902515_P_NODE_3034_length_419_cov_45.312139_g3011_i0 PRJNA902515 3034 419 45.312139 189.85786241 Tritrichomonas 5723 Parabasalia other_Eukaryota 760 0   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g3011 i0 99.52 99.6968973747017 417 2 99 0 1 417 798 382 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 41773 760 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
20007876 20007876 PRJNA902515_P_NODE_16396_length_229_cov_6.570513_g16373_i0 PRJNA902515 16396 229 6.570513 15.04647477 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 250 6.75e-62   NTclustered gi|2274983416|gb|OP038912.1| 5725 g16373 i0 86.58 4.02183406113537 231 26 100 5 1 229 2469 2696 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 921 250 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;