RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA902515" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA902515 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14000589 14000589 PRJNA902515_P_NODE_16451_length_222_cov_5.536913_g16428_i0 PRJNA902515 16451 222 5.536913 12.29194686 Acanthamoeba 5754 Discosea other_Eukaryota 359 1.04e-94   NTclustered gi|155633|gb|L09599.1|ACASSR 28015 g16428 i0 98.522 82.4369369369369 203 3 91 0 12 214 2285 2083 Acanthamoeba palestinensis small subunit ribosomal RNA gene sequence blastn 18301 359 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba palestinensis
23833425 23833425 PRJNA902515_P_NODE_16459_length_206_cov_5.112782_g16436_i0 PRJNA902515 16459 206 5.112782 10.53233092 Acanthamoeba sp. KA/MSG12 215567 Discosea other_Eukaryota 350 5.7e-92   NTclustered gi|27085438|gb|AY173006.1| 215567 g16436 i0 99.479 84.6553398058252 192 1 93 0 7 198 2359 2168 Acanthamoeba sp. KA/MSG12 18S ribosomal RNA gene, complete sequence blastn 17439 350 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp. KA/MSG12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;