RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA900999" and tax_phylum = "Foraminifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA900999 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5074142 5074142 PRJNA900999_S_NODE_4544_length_203_cov_4.436782_g4488_i0 PRJNA900999 4544 203 4.436782 9.00666746 Astrammina 46077 SAR_Eukaryotes SAR_Eukaryotes 291 3.44e-74   NTclustered gi|14488123|emb|AJ318223.1| 46078 g4488 i0 94.211 90.9802955665025 190 11 94 0 14 203 974 785 Astrammina rara 18S rRNA gene, isolate 111 blastn 18469 291 1 Eukaryota Sar   Foraminifera       Astrammina Astrammina rara
13631802 13631802 PRJNA900999_S_NODE_2231_length_264_cov_12.629787_g2175_i0 PRJNA900999 2231 264 12.629787 33.34263768 Robertina arctica 551669 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.11e-10   NTclustered gi|873754164|emb|LN851740.1| 551669 g2175 i0 83.333 34.0227272727273 90 11 45 2 175 262 88 1 Robertina arctica partial 28S rRNA gene, isolate 12722, clone 1 blastn 8982 80.5 1 Eukaryota Sar   Foraminifera   Rotaliida Robertinidae Robertina Robertina arctica
22554943 22554943 PRJNA900999_S_NODE_4998_length_195_cov_29.746988_g4942_i0 PRJNA900999 4998 195 29.746988 58.0066266 Cribrostomoides sp. 2282373 SAR_Eukaryotes SAR_Eukaryotes 169 1.6e-37   NTclustered gi|1433211029|gb|MF771011.1| 2282373 g4942 i0 85.976 52.374358974359 164 16 82 6 20 178 557 396 Cribrostomoides sp. isolate 17496 clone a 28S ribosomal RNA gene, partial sequence blastn 10213 169 1 Eukaryota Sar   Foraminifera   Textulariida Trochamminidae Cribrostomoides Cribrostomoides sp.
22923677 22923677 PRJNA900999_S_NODE_3038_length_237_cov_3.129808_g2982_i0 PRJNA900999 3038 237 3.129808 7.41764496 Allogromiidae 160355 SAR_Eukaryotes SAR_Eukaryotes 147 9.49e-31   NTclustered gi|559105584|emb|HE998683.1| 1238463 g2982 i0 93 42.4430379746835 100 7 42 0 120 219 2186 2285 Psammophaga sp. 12208 partial 18s rRNA gene, isolate 12208 blastn 10059 147 1 Eukaryota Sar   Foraminifera       Psammophaga Psammophaga sp. 12208

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;