RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA900999" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA900999 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3428862 3428862 PRJNA900999_S_NODE_4963_length_196_cov_4.700599_g4907_i0 PRJNA900999 4963 196 4.700599 9.21317404 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 219 1.58e-52   NTclustered gi|1015624362|gb|AH012920.2| 171953 g4907 i0 86.869 3.51020408163265 198 22 100 3 1 196 31419 31224 Uncultured Acidobacteria bacterium clone 46h5 hypothetical protein, putative O-linked GlcNAc transferase, putative two-component response regulator, hypothetical protein, putative penicillin-resistance DD-carboxypeptidase, putative glycosyl transferase, hypothetical protein, conserved hypothetical protein, hypothetical protein, putative MaoC family dehydratase, putative D-3-phosphoglycerate dehydrogenase, putative magnesium and cobalt transport protein, putative phosphatidyl-glycerophosphatase, putative 2-methylthioadenine synthetase, hypothetical protein, putative glutamine cyclotransferase, and hypothetical protein genes, complete cds; 5S ribosomal RNA, 23S ribosomal RNA, tRNA-Ala, tRNA-Met, tRNA-Ile, and 16S ribosomal RNA genes, complete sequence; and hypothetical protein genes, complete cds blastn 688 219 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
3797980 3797980 PRJNA900999_S_NODE_8923_length_155_cov_12.793651_g8867_i0 PRJNA900999 8923 155 12.793651 19.83015905 Bacteria 2 Bacteria Bacteria 171 3.37e-38   NTclustered gi|2874253677|emb|OY969111.1| 171953 g8867 i0 86.957 66.5806451612903 161 9 100 11 1 155 715995 716149 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 10320 171 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
4706732 4706732 PRJNA900999_S_NODE_504_length_428_cov_27.483709_g451_i0 PRJNA900999 504 428 27.483709 117.63027452 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 512 1.58e-140   NTclustered gi|2874253692|emb|OY969418.1| 171953 g451 i0 88.222 480.42523364486 433 45 100 5 1 428 4233442 4233873 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 205622 512 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
4706770 4706770 PRJNA900999_S_NODE_904_length_351_cov_35.108696_g848_i0 PRJNA900999 904 351 35.108696 123.23152296 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 444 4.68e-120   NTclustered gi|2874253692|emb|OY969418.1| 171953 g848 i0 89.855 443.518518518519 345 35 98 0 7 351 4233786 4233442 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 155675 444 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
7256213 7256213 PRJNA900999_S_NODE_6526_length_176_cov_14.605442_g6470_i0 PRJNA900999 6526 176 14.605442 25.70557792 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 241 2.950000000000001e-59   NTclustered gi|217038899|gb|EU810989.1| 171953 g6470 i0 93.293 154.306818181818 164 9 93 2 7 169 163 1 Uncultured Acidobacteria bacterium clone 01QD9 23S ribosomal RNA gene, partial sequence blastn 27158 241 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
9805989 9805989 PRJNA900999_S_NODE_2388_length_258_cov_5.117904_g2332_i0 PRJNA900999 2388 258 5.117904 13.20419232 Acidobacteriota bacterium 1978231 Bacteria Bacteria 320 5.83e-83   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g2332 i0 89.641 111.445736434109 251 26 97 0 8 258 4648920 4648670 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 28753 320 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
12357030 12357030 PRJNA900999_S_NODE_3050_length_236_cov_24.130435_g2994_i0 PRJNA900999 3050 236 24.130435 56.9478266 Acidobacteriota bacterium 1978231 Bacteria Bacteria 261 3.23e-65   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g2994 i0 88.889 41.6059322033898 216 19 90 5 1 213 317465 317252 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 9819 261 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;