RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA900999" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA900999 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2153429 2153429 PRJNA900999_S_NODE_6422_length_178_cov_2.489933_g6366_i0 PRJNA900999 6422 178 2.489933 4.43208074 Allomeiothermus silvanus 52022 Bacteria Bacteria 320 3.74e-83   NTclustered gi|296848933|gb|CP002042.1| 526227 g6366 i0 99.432 0.98876404494382 176 1 99 0 1 176 1556158 1555983 Meiothermus silvanus DSM 9946, complete genome blastn 176 320 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus
3428828 3428828 PRJNA900999_S_NODE_2003_length_274_cov_12.702041_g1947_i0 PRJNA900999 2003 274 12.702041 34.80359234 Deinococcus actinosclerus 1768108 Bacteria Bacteria 492 1.2499999999999996e-134   NTclustered gi|972944657|gb|CP013910.1| 1768108 g1947 i0 99.628 197.821167883212 269 1 99 0 6 274 73702 73434 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 54203 492 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
4706736 4706736 PRJNA900999_S_NODE_5644_length_187_cov_2.651899_g5588_i0 PRJNA900999 5644 187 2.651899 4.95905113 Allomeiothermus silvanus 52022 Bacteria Bacteria 340 3.0499999999999998e-89   NTclustered gi|296848933|gb|CP002042.1| 526227 g5588 i0 99.465 1 187 1 100 0 1 187 1497904 1497718 Meiothermus silvanus DSM 9946, complete genome blastn 187 340 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus
6350042 6350042 PRJNA900999_S_NODE_9345_length_153_cov_2.540323_g9289_i0 PRJNA900999 9345 153 2.540323 3.88669419 Deinococcus 1298 Bacteria Bacteria 278 1.9e-70   NTclustered gi|3093386|emb|AJ000002.1| 68909 g9289 i0 99.346 103.986928104575 153 1 100 0 1 153 1279 1127 Deinococcus geothermalis 16S rRNA gene, strain E50053 blastn 15910 278 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
20004698 20004698 PRJNA900999_S_NODE_3956_length_214_cov_12.081081_g3900_i0 PRJNA900999 3956 214 12.081081 25.85351334 Deinococcus radiopugnans 57497 Bacteria Bacteria 370 4.58e-98   NTclustered gi|730601855|gb|CP010028.1| 57497 g3900 i0 98.565 204.654205607477 209 3 99 0 6 214 69363 69155 Deinococcus swuensis strain DY59, complete genome blastn 43796 370 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans
25472696 25472696 PRJNA900999_S_NODE_7540_length_166_cov_31.189781_g7484_i0 PRJNA900999 7540 166 31.189781 51.77503646 Deinococcus 1298 Bacteria Bacteria 265 1.64e-66   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g7484 i0 100 257.524096385542 143 0 86 0 24 166 3061135 3060993 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 42749 265 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;