RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA900999" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA900999 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8530942 8530942 PRJNA900999_S_NODE_2807_length_243_cov_22.813084_g2751_i0 PRJNA900999 2807 243 22.813084 55.43579412 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 254 5.59e-63   NTclustered gi|1958070929|gb|CP064991.1| 2026720 g2751 i0 87.671 47.2427983539095 219 26 90 1 24 242 87338 87121 Candidatus Saccharibacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.362_fly chromosome, complete genome blastn 11480 254 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
12357032 12357032 PRJNA900999_S_NODE_3110_length_234_cov_27.556098_g3054_i0 PRJNA900999 3110 234 27.556098 64.48126932 Candidatus Southlakia epibionticum 3043284 Bacteria Bacteria 307 4.05e-79   NTclustered gi|2516687873|gb|CP124550.1| 3043284 g3054 i0 92.991 78.6239316239316 214 10 90 5 1 211 150368 150157 Candidatus Southlakia epibionticum strain ML1 chromosome, complete genome blastn 18398 307 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Southlakia Candidatus Southlakia epibionticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;