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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA900028" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 5 ✖

bioproject 1

  • PRJNA900028 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1244622 1244622 PRJNA900028_P_NODE_114721_length_169_cov_1.241667_g113972_i0 PRJNA900028 114721 169 1.241667 2.09841723 Methanothrix 2222 Archaea Archaea 313 5.859999999999999e-81   NTclustered gi|507148322|ref|NR_103125.1| 2223 g113972 i0 100 16.6449704142012 169 0 100 0 1 169 310 142 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 2813 313 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
5073097 5073097 PRJNA900028_P_NODE_188064_length_161_cov_1.366071_g187315_i0 PRJNA900028 188064 161 1.366071 2.19937431 root 1 Root_unresolved Root_unresolved 292 7.24e-75   NTclustered gi|18996831|gb|AF473887.1| 29281 g187315 i0 99.379 99.8136645962733 161 1 100 0 1 161 213 373 Uncultured crenarchaeote r-5_08K 16S ribosomal RNA gene, partial sequence blastn 16070 292 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
16178343 16178343 PRJNA900028_P_NODE_4933_length_484_cov_1.466667_g4197_i0 PRJNA900028 4933 484 1.466667 7.09866828 uncultured crenarchaeote 29281 Archaea Archaea 750 0   NTclustered gi|42557759|emb|AJ627422.1| 29281 g4197 i0 94.628 104.473140495868 484 26 100 0 1 484 42481 42964 Uncultured crenarchaeote genomic fragment 54d9 blastn 50565 750 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
20001915 20001915 PRJNA900028_P_NODE_2436_length_709_cov_1.093939_g1766_i0 PRJNA900028 2436 709 1.093939 7.75602751 Salinigranum rubrum 755307 Archaea Archaea 56.5 0.005   NTclustered gi|1336549475|gb|CP026309.1| 755307 g1766 i0 89.362 0.0662905500705219 47 2 7 3 242 288 2303461 2303418 Salinigranum rubrum strain GX10 chromosome, complete genome blastn 47 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinigranum Salinigranum rubrum
25100935 25100935 PRJNA900028_P_NODE_168280_length_163_cov_0.894737_g167531_i0 PRJNA900028 168280 163 0.894737 1.45842131 Methanobrevibacter acididurans 120963 Archaea Archaea 110 7.95e-20   NTclustered gi|2871247231|gb|CP166991.1| 120963 g167531 i0 83.333 4.07361963190184 120 18 73 2 37 155 857234 857352 Methanobrevibacter acididurans strain DSM 15163 chromosome, complete genome blastn 664 110 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter acididurans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;