RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA900028" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA900028 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7252602 7252602 PRJNA900028_P_NODE_123166_length_167_cov_0.864407_g122417_i0 PRJNA900028 123166 167 0.864407 1.44355969 Metamycoplasma faucium 56142 Bacteria Bacteria 292 7.58e-75   NTclustered gi|2708452869|gb|CP088155.1| 56142 g122417 i0 98.204 1.9940119760479 167 3 100 0 1 167 38412 38578 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 333 292 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
12353408 12353408 PRJNA900028_P_NODE_123590_length_167_cov_0.864407_g122841_i0 PRJNA900028 123590 167 0.864407 1.44355969 Metamycoplasma faucium 56142 Bacteria Bacteria 287 3.53e-73   NTclustered gi|2708452869|gb|CP088155.1| 56142 g122841 i0 97.605 3.69461077844311 167 4 100 0 1 167 615778 615612 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 617 287 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;