RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA900028" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA900028 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17453947 17453947 PRJNA900028_P_NODE_5754_length_447_cov_2.022613_g5012_i0 PRJNA900028 5754 447 2.022613 9.04108011 uncultured Ignavibacteriales bacterium 1191687 Bacteria Bacteria 237 1.11e-57   NTclustered gi|2874253946|emb|OY970271.1| 1191687 g5012 i0 78.426 59.3624161073826 394 64 85 19 14 395 1262449 1262833 MAG: uncultured Ignavibacteriales bacterium isolate MFD02416.bin.c.14 genome assembly, chromosome: 1 blastn 26535 237 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     uncultured Ignavibacteriales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;