RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA898105" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA898105 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5977150 5977150 PRJNA898105_P_NODE_4865_length_274_cov_2.587065_g4665_i0 PRJNA898105 4865 274 2.587065 7.0885581 Acidobacteriota bacterium 1978231 Bacteria Bacteria 418 2.15e-112   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g4665 i0 94.161 148.339416058394 274 16 100 0 1 274 320867 320594 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 40645 418 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
7251981 7251981 PRJNA898105_P_NODE_5786_length_257_cov_1.625000_g5586_i0 PRJNA898105 5786 257 1.625 4.17625 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 436 5.52e-118   NTclustered gi|2874254027|emb|OY970352.1| 171953 g5586 i0 97.276 526.813229571984 257 7 100 0 1 257 2365914 2365658 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 135391 436 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
25099858 25099858 PRJNA898105_P_NODE_7400_length_245_cov_1.715116_g7200_i0 PRJNA898105 7400 245 1.715116 4.2020342 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874253836|emb|OY969886.1| 171953 g7200 i0 96.875 0.130612244897959 32 1 13 0 85 116 2338574 2338543 MAG: uncultured Acidobacteriota bacterium isolate MFD10007.bin.c.1 genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;