RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA898105" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA898105 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3424625 3424625 PRJNA898105_P_NODE_3_length_4864_cov_6.872678_g2_i0 PRJNA898105 3 4864 6.872678 334.28705792 Zebrafish picornavirus 1 2304617 Viruses Viruses 8098 0   NTclustered gi|2500378199|ref|NC_076245.1| 2304617 g2 i0 96.731 3.05180921052632 4864 155 100 2 1 4864 8297 3438 Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome blastn 14844 8098 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
12352775 12352775 PRJNA898105_P_NODE_7170_length_246_cov_1.398844_g6970_i0 PRJNA898105 7170 246 1.398844 3.44115624 Zebrafish picornavirus 1 2304617 Viruses Viruses 425 1.14e-114   NTclustered gi|2500378199|ref|NC_076245.1| 2304617 g6970 i0 98.347 2.96747967479675 242 4 98 0 5 246 1304 1063 Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome blastn 730 425 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
20000427 20000427 PRJNA898105_P_NODE_3576_length_307_cov_2.555556_g3376_i0 PRJNA898105 3576 307 2.555556 7.84555692 Zebrafish picornavirus 1 2304617 Viruses Viruses 503 6.58e-138   NTclustered gi|2500378199|ref|NC_076245.1| 2304617 g3376 i0 96.689 2.95114006514658 302 10 98 0 1 302 6700 7001 Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome blastn 906 503 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
25099871 25099871 PRJNA898105_P_NODE_8400_length_241_cov_0.904762_g8200_i0 PRJNA898105 8400 241 0.904762 2.18047642 Zebrafish picornavirus 1 2304617 Viruses Viruses 375 1.1299999999999998e-99   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g8200 i0 94.979 2.9792531120332 239 12 99 0 1 239 2976 2738 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 718 375 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;