RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA898105" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA898105 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1244206 1244206 PRJNA898105_P_NODE_4161_length_286_cov_1.671362_g3961_i0 PRJNA898105 4161 286 1.671362 4.78009532 Trebouxia 13786 Plants Plants 510 3.63e-140   NTclustered gi|21631|emb|Z21553.1| 13787 g3961 i0 98.947 99.6503496503497 285 3 99 0 1 285 705 989 T.asymmetrica gene encoding 18S ribosomal RNA blastn 28500 510 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
17452039 17452039 PRJNA898105_P_NODE_4594_length_279_cov_1.975728_g4394_i0 PRJNA898105 4594 279 1.975728 5.51228112 Stichococcus bacillaris 37433 Plants Plants 318 2.2899999999999995e-82   NTclustered gi|371782093|emb|HE610125.1| 37433 g4394 i0 96.842 14.9498207885305 190 6 68 0 1 190 6993 7182 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 4171 318 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
20000467 20000467 PRJNA898105_P_NODE_7076_length_247_cov_0.885057_g6876_i0 PRJNA898105 7076 247 0.885057 2.18609079 Myrmecia israelensis 3171 Plants Plants 429 8.83e-116   NTclustered gi|2724824566|gb|PP746563.1| 3171 g6876 i0 98.755 58.5910931174089 241 3 98 0 1 241 5778 6018 Myrmecia israelensis culture UTEX:1181 mitochondrion, complete genome blastn 14472 429 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;