RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA898105" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA898105 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4702400 4702400 PRJNA898105_P_NODE_2244_length_395_cov_0.925466_g2044_i0 PRJNA898105 2244 395 0.925466 3.6555907 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 619 8.259999999999999e-173   NTclustered gi|2651357791|gb|PP174306.1| 41631 g2044 i0 94.937 95.4582278481013 395 20 100 0 1 395 3294 3688 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 37706 619 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
4702445 4702445 PRJNA898105_P_NODE_7124_length_247_cov_0.885057_g6924_i0 PRJNA898105 7124 247 0.885057 2.18609079 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 250 7.38e-62   NTclustered gi|220966760|gb|FJ545743.1| 94289 g6924 i0 85.2 23.4736842105263 250 30 100 7 1 247 7369 7124 Sterkiella histriomuscorum 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; macronuclear blastn 5798 250 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
8526634 8526634 PRJNA898105_P_NODE_2887_length_346_cov_0.926740_g2687_i0 PRJNA898105 2887 346 0.92674 3.2065204 Actinophrys sol 238771 SAR_Eukaryotes SAR_Eukaryotes 303 8.19e-78   NTclustered gi|33089901|gb|AY283760.1| 238771 g2687 i0 83.436 89.0953757225434 326 54 94 0 17 342 458 133 Actinophrys sol isolate AsolAc2_5 actin gene, partial cds blastn 30827 303 1 Eukaryota Sar     Actinophryidae     Actinophrys Actinophrys sol
10172817 10172817 PRJNA898105_P_NODE_7408_length_245_cov_1.540698_g7208_i0 PRJNA898105 7408 245 1.540698 3.7747101 Spirotrichea 33829 SAR_Eukaryotes SAR_Eukaryotes 451 1.87e-122   NTclustered gi|16943686|emb|AJ310496.1| 5949 g7208 i0 100 99.5918367346939 244 0 99 0 2 245 792 1035 Stylonychia lemnae 18S rRNA gene, strain 1W blastn 24400 451 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
12352736 12352736 PRJNA898105_P_NODE_4130_length_287_cov_1.135514_g3930_i0 PRJNA898105 4130 287 1.135514 3.25892518 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 462 1.03e-125   NTclustered gi|2651357788|gb|PP174303.1| 41631 g3930 i0 95.819 84.5156794425087 287 11 100 1 1 287 3795 3510 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24256 462 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
23826005 23826005 PRJNA898105_P_NODE_6399_length_250_cov_0.870056_g6199_i0 PRJNA898105 6399 250 0.870056 2.17514 Ulnaria acus 1436140 SAR_Eukaryotes SAR_Eukaryotes 462 8.83e-126   NTclustered gi|378824466|ref|NC_016731.1| 1436140 g6199 i0 100 195.96 250 0 100 0 1 250 67280 67031 Synedra acus chloroplast, complete genome blastn 48990 462 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Licmophorales Ulnariaceae Ulnaria Ulnaria acus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;