RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA898105" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA898105 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7622274 7622274 PRJNA898105_P_NODE_5706_length_259_cov_1.241935_g5506_i0 PRJNA898105 5706 259 1.241935 3.21661165 Didymium 5792 Evosea other_Eukaryota 268 2.1499999999999998e-67   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g5506 i0 91.837 12.8146718146718 196 11 75 5 1 194 7386 7194 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3319 268 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
13627618 13627618 PRJNA898105_P_NODE_5511_length_262_cov_2.566138_g5311_i0 PRJNA898105 5511 262 2.566138 6.72328156 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 468 1.9999999999999996e-127   NTclustered gi|300078496|gb|GU001158.1| 5778 g5311 i0 98.859 30.3053435114504 263 2 100 1 1 262 4103 4365 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7940 468 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25470920 25470920 PRJNA898105_P_NODE_1740_length_458_cov_1.200000_g1540_i0 PRJNA898105 1740 458 1.2 5.496 Dictyostelium 5782 Evosea other_Eukaryota 529 1.6799999999999992e-145   NTclustered gi|167579|gb|M14146.1|DDIACT15 44689 g1540 i0 91.237 83.2423580786026 388 34 85 0 1 388 1257 1644 D.discoideum actin 15 gene, complete cds blastn 38125 534 0.99063670411985 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;