RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA897077" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA897077 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
873713 873713 PRJNA897077_P_NODE_2681_length_586_cov_1.323587_g2554_i0 PRJNA897077 2681 586 1.323587 7.75621982 Littorina saxatilis 31220 Mollusca Mollusca 272 4.08e-68   NTclustered gi|2868688207|ref|XM_070347684.1| 31220 g2554 i0 82.838 44.6962457337884 303 52 52 0 225 527 526 828 PREDICTED: Littorina saxatilis protein yippee-like 1 (LOC138975036), transcript variant X1, mRNA blastn 26192 272 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
2149065 2149065 PRJNA897077_P_NODE_7502_length_356_cov_1.653710_g7375_i0 PRJNA897077 7502 356 1.65371 5.8872076 Argopecten irradians 31199 Mollusca Mollusca 267 1.11e-66   NTclustered gi|2835371159|ref|XM_069259847.1| 31199 g7375 i0 81.346 89.9719101123596 327 61 92 0 29 355 150 476 PREDICTED: Argopecten irradians actin, cytoplasmic-like (LOC138317873), mRNA blastn 32030 267 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
5977133 5977133 PRJNA897077_P_NODE_9965_length_313_cov_0.808333_g9838_i0 PRJNA897077 9965 313 0.808333 2.53008229 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.002   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g9838 i0 100 0.0958466453674121 30 0 10 0 45 74 35787166 35787195 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11077211 11077211 PRJNA897077_P_NODE_4309_length_465_cov_4.119898_g4182_i0 PRJNA897077 4309 465 4.119898 19.1575257 Mollusca environmental sample 653389 Mollusca Mollusca 368 3.95e-97   NTclustered gi|156254524|gb|EF528299.1| 653389 g4182 i0 82.189 59.2344086021505 466 48 99 20 2 465 1005 573 Uncultured mollusc isolate XenLSU7 28S ribosomal RNA gene, partial sequence blastn 27544 368 1 Eukaryota Opisthokonta Metazoa Mollusca         Mollusca environmental sample
25470902 25470902 PRJNA897077_P_NODE_7340_length_360_cov_1.358885_g7213_i0 PRJNA897077 7340 360 1.358885 4.891986 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 237 8.78e-58   NTclustered gi|669205831|gb|KF494231.1| 87958 g7213 i0 80 91.9666666666667 330 58 91 6 27 352 479 154 Patella caerulea beta-actin mRNA, partial cds blastn 33108 239 0.99163179916318 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella caerulea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;