RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA897077" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA897077 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2148914 2148914 PRJNA897077_P_NODE_17862_length_247_cov_0.896552_g17735_i0 PRJNA897077 17862 247 0.896552 2.21448344 Thermoanaerobaculaceae bacterium 2699758 Bacteria Bacteria 318 1.9899999999999998e-82   NTclustered gi|2874254005|emb|OY970330.1| 2699758 g17735 i0 90.456 12.7206477732794 241 23 98 0 7 247 966659 966419 MAG: Thermoanaerobaculaceae bacterium isolate MFD05537.bin.c.1 genome assembly, chromosome: 1 blastn 3142 318 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales Thermoanaerobaculaceae   Thermoanaerobaculaceae bacterium
2148944 2148944 PRJNA897077_P_NODE_19522_length_243_cov_0.917647_g19395_i0 PRJNA897077 19522 243 0.917647 2.22988221 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 333 6.989999999999999e-87   NTclustered gi|2874253709|emb|OY969474.1| 171953 g19395 i0 94.884 1.09465020576132 215 7 87 4 32 243 605819 605606 MAG: uncultured Acidobacteriota bacterium isolate MFD05747.bin.1.131 genome assembly, chromosome: 1 blastn 266 333 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
7251655 7251655 PRJNA897077_P_NODE_11086_length_297_cov_1.330357_g10959_i0 PRJNA897077 11086 297 1.330357 3.95116029 Acidobacteriota bacterium 1978231 Bacteria Bacteria 521 1.7499999999999996e-143   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g10959 i0 98.322 207.784511784512 298 4 100 1 1 297 3300638 3300935 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 61712 521 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
11077153 11077153 PRJNA897077_P_NODE_19329_length_243_cov_0.917647_g19202_i0 PRJNA897077 19329 243 0.917647 2.22988221 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 405 1.46e-108   NTclustered gi|2874253709|emb|OY969474.1| 171953 g19202 i0 96.708 3.37448559670782 243 8 100 0 1 243 1187366 1187608 MAG: uncultured Acidobacteriota bacterium isolate MFD05747.bin.1.131 genome assembly, chromosome: 1 blastn 820 405 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
25099646 25099646 PRJNA897077_P_NODE_19520_length_243_cov_0.917647_g19393_i0 PRJNA897077 19520 243 0.917647 2.22988221 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 128 3.54e-25   NTclustered gi|2874254049|emb|OY970373.1| 171953 g19393 i0 88.288 45.8765432098765 111 8 44 5 111 218 7646553 7646445 MAG: uncultured Acidobacteriota bacterium isolate MFD09368.bin.c.1 genome assembly, chromosome: 1 blastn 11148 128 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;