RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA897077" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA897077 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
873739 873739 PRJNA897077_P_NODE_4281_length_467_cov_2.230964_g4154_i0 PRJNA897077 4281 467 2.230964 10.41860188 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 52.8 0.045   NTclustered gi|686643052|ref|XM_009315697.1| 71804 g4154 i0 96.875 0.0685224839400428 32 0 7 1 60 90 652 683 Trypanosoma grayi hypothetical protein partial mRNA blastn 32 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
12723697 12723697 PRJNA897077_P_NODE_19310_length_243_cov_0.917647_g19183_i0 PRJNA897077 19310 243 0.917647 2.22988221 Naegleria 5761 Heterolobosea other_Eukaryota 449 6.65e-122   NTclustered gi|2618963742|gb|OR769034.1| 5762 g19183 i0 100 10.1893004115226 243 0 100 0 1 243 5748 5506 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2476 449 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20000377 20000377 PRJNA897077_P_NODE_7896_length_348_cov_0.850909_g7769_i0 PRJNA897077 7896 348 0.850909 2.96116332 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 52.8 0.033   NTclustered gi|1624753885|ref|XM_029027871.1| 67003 g7769 i0 100 0.0804597701149425 28 0 8 0 47 74 4445 4418 Trypanosoma theileri uncharacterized protein (TM35_000261340), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
22921808 22921808 PRJNA897077_P_NODE_6298_length_387_cov_2.468153_g6171_i0 PRJNA897077 6298 387 2.468153 9.55175211 Naegleria 5761 Heterolobosea other_Eukaryota 710 0   NTclustered gi|2651357780|gb|PP174296.1| 36333 g6171 i0 99.742 42.0542635658915 387 1 100 0 1 387 1794 2180 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16275 710 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;